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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-219381406-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=219381406&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 219381406,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001319116.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1168C>A",
"hgvs_p": "p.Arg390Ser",
"transcript": "NM_012100.4",
"protein_id": "NP_036232.2",
"transcript_support_level": null,
"aa_start": 390,
"aa_end": null,
"aa_length": 485,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1458,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000273075.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_012100.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1168C>A",
"hgvs_p": "p.Arg390Ser",
"transcript": "ENST00000273075.9",
"protein_id": "ENSP00000273075.4",
"transcript_support_level": 1,
"aa_start": 390,
"aa_end": null,
"aa_length": 485,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1458,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_012100.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000273075.9"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1192C>A",
"hgvs_p": "p.Arg398Ser",
"transcript": "NM_001319116.2",
"protein_id": "NP_001306045.1",
"transcript_support_level": null,
"aa_start": 398,
"aa_end": null,
"aa_length": 493,
"cds_start": 1192,
"cds_end": null,
"cds_length": 1482,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319116.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1192C>A",
"hgvs_p": "p.Arg398Ser",
"transcript": "ENST00000523282.6",
"protein_id": "ENSP00000431076.1",
"transcript_support_level": 2,
"aa_start": 398,
"aa_end": null,
"aa_length": 493,
"cds_start": 1192,
"cds_end": null,
"cds_length": 1482,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000523282.6"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1186C>A",
"hgvs_p": "p.Arg396Ser",
"transcript": "ENST00000851982.1",
"protein_id": "ENSP00000522041.1",
"transcript_support_level": null,
"aa_start": 396,
"aa_end": null,
"aa_length": 491,
"cds_start": 1186,
"cds_end": null,
"cds_length": 1476,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851982.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1168C>A",
"hgvs_p": "p.Arg390Ser",
"transcript": "ENST00000851983.1",
"protein_id": "ENSP00000522042.1",
"transcript_support_level": null,
"aa_start": 390,
"aa_end": null,
"aa_length": 481,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851983.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1153C>A",
"hgvs_p": "p.Arg385Ser",
"transcript": "ENST00000851986.1",
"protein_id": "ENSP00000522045.1",
"transcript_support_level": null,
"aa_start": 385,
"aa_end": null,
"aa_length": 480,
"cds_start": 1153,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851986.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1147C>A",
"hgvs_p": "p.Arg383Ser",
"transcript": "ENST00000851984.1",
"protein_id": "ENSP00000522043.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 478,
"cds_start": 1147,
"cds_end": null,
"cds_length": 1437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851984.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1126C>A",
"hgvs_p": "p.Arg376Ser",
"transcript": "NM_001319118.2",
"protein_id": "NP_001306047.1",
"transcript_support_level": null,
"aa_start": 376,
"aa_end": null,
"aa_length": 471,
"cds_start": 1126,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319118.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1126C>A",
"hgvs_p": "p.Arg376Ser",
"transcript": "NM_001319119.2",
"protein_id": "NP_001306048.1",
"transcript_support_level": null,
"aa_start": 376,
"aa_end": null,
"aa_length": 471,
"cds_start": 1126,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319119.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1126C>A",
"hgvs_p": "p.Arg376Ser",
"transcript": "ENST00000520694.6",
"protein_id": "ENSP00000429468.2",
"transcript_support_level": 3,
"aa_start": 376,
"aa_end": null,
"aa_length": 471,
"cds_start": 1126,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000520694.6"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1084C>A",
"hgvs_p": "p.Arg362Ser",
"transcript": "NM_001319117.2",
"protein_id": "NP_001306046.1",
"transcript_support_level": null,
"aa_start": 362,
"aa_end": null,
"aa_length": 457,
"cds_start": 1084,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319117.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1084C>A",
"hgvs_p": "p.Arg362Ser",
"transcript": "ENST00000964369.1",
"protein_id": "ENSP00000634428.1",
"transcript_support_level": null,
"aa_start": 362,
"aa_end": null,
"aa_length": 457,
"cds_start": 1084,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964369.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1060C>A",
"hgvs_p": "p.Arg354Ser",
"transcript": "NM_001319120.2",
"protein_id": "NP_001306049.1",
"transcript_support_level": null,
"aa_start": 354,
"aa_end": null,
"aa_length": 449,
"cds_start": 1060,
"cds_end": null,
"cds_length": 1350,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319120.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1060C>A",
"hgvs_p": "p.Arg354Ser",
"transcript": "ENST00000925428.1",
"protein_id": "ENSP00000595487.1",
"transcript_support_level": null,
"aa_start": 354,
"aa_end": null,
"aa_length": 449,
"cds_start": 1060,
"cds_end": null,
"cds_length": 1350,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925428.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1054C>A",
"hgvs_p": "p.Arg352Ser",
"transcript": "ENST00000851985.1",
"protein_id": "ENSP00000522044.1",
"transcript_support_level": null,
"aa_start": 352,
"aa_end": null,
"aa_length": 447,
"cds_start": 1054,
"cds_end": null,
"cds_length": 1344,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851985.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1045C>A",
"hgvs_p": "p.Arg349Ser",
"transcript": "ENST00000964371.1",
"protein_id": "ENSP00000634430.1",
"transcript_support_level": null,
"aa_start": 349,
"aa_end": null,
"aa_length": 444,
"cds_start": 1045,
"cds_end": null,
"cds_length": 1335,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964371.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1009C>A",
"hgvs_p": "p.Arg337Ser",
"transcript": "NM_001319121.2",
"protein_id": "NP_001306050.1",
"transcript_support_level": null,
"aa_start": 337,
"aa_end": null,
"aa_length": 432,
"cds_start": 1009,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319121.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.1009C>A",
"hgvs_p": "p.Arg337Ser",
"transcript": "NM_001319122.2",
"protein_id": "NP_001306051.1",
"transcript_support_level": null,
"aa_start": 337,
"aa_end": null,
"aa_length": 432,
"cds_start": 1009,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001319122.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.943C>A",
"hgvs_p": "p.Arg315Ser",
"transcript": "ENST00000373972.5",
"protein_id": "ENSP00000363083.1",
"transcript_support_level": 2,
"aa_start": 315,
"aa_end": null,
"aa_length": 410,
"cds_start": 943,
"cds_end": null,
"cds_length": 1233,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373972.5"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "c.871C>A",
"hgvs_p": "p.Arg291Ser",
"transcript": "ENST00000964370.1",
"protein_id": "ENSP00000634429.1",
"transcript_support_level": null,
"aa_start": 291,
"aa_end": null,
"aa_length": 386,
"cds_start": 871,
"cds_end": null,
"cds_length": 1161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000964370.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNPEP",
"gene_hgnc_id": 2981,
"hgvs_c": "n.*992C>A",
"hgvs_p": null,
"transcript": "ENST00000373963.5",
"protein_id": "ENSP00000363074.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
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"biotype": "nonsense_mediated_decay",
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}
],
"message": null
}