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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-224765821-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=224765821&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 224765821,
"ref": "T",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001363762.1",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6461A>T",
"hgvs_p": "p.Asp2154Val",
"transcript": "NM_014689.3",
"protein_id": "NP_055504.2",
"transcript_support_level": null,
"aa_start": 2154,
"aa_end": null,
"aa_length": 2186,
"cds_start": 6461,
"cds_end": null,
"cds_length": 6561,
"cdna_start": 6555,
"cdna_end": null,
"cdna_length": 7286,
"mane_select": "ENST00000258390.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014689.3"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6461A>T",
"hgvs_p": "p.Asp2154Val",
"transcript": "ENST00000258390.12",
"protein_id": "ENSP00000258390.7",
"transcript_support_level": 5,
"aa_start": 2154,
"aa_end": null,
"aa_length": 2186,
"cds_start": 6461,
"cds_end": null,
"cds_length": 6561,
"cdna_start": 6555,
"cdna_end": null,
"cdna_length": 7286,
"mane_select": "NM_014689.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000258390.12"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6443A>T",
"hgvs_p": "p.Asp2148Val",
"transcript": "ENST00000409592.7",
"protein_id": "ENSP00000386694.3",
"transcript_support_level": 1,
"aa_start": 2148,
"aa_end": null,
"aa_length": 2180,
"cds_start": 6443,
"cds_end": null,
"cds_length": 6543,
"cdna_start": 6557,
"cdna_end": null,
"cdna_length": 7288,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409592.7"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6500A>T",
"hgvs_p": "p.Asp2167Val",
"transcript": "NM_001363762.1",
"protein_id": "NP_001350691.1",
"transcript_support_level": null,
"aa_start": 2167,
"aa_end": null,
"aa_length": 2199,
"cds_start": 6500,
"cds_end": null,
"cds_length": 6600,
"cdna_start": 6559,
"cdna_end": null,
"cdna_length": 7290,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001363762.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6500A>T",
"hgvs_p": "p.Asp2167Val",
"transcript": "ENST00000645028.1",
"protein_id": "ENSP00000493664.1",
"transcript_support_level": null,
"aa_start": 2167,
"aa_end": null,
"aa_length": 2199,
"cds_start": 6500,
"cds_end": null,
"cds_length": 6600,
"cdna_start": 6559,
"cdna_end": null,
"cdna_length": 7276,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000645028.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6443A>T",
"hgvs_p": "p.Asp2148Val",
"transcript": "NM_001290263.2",
"protein_id": "NP_001277192.1",
"transcript_support_level": null,
"aa_start": 2148,
"aa_end": null,
"aa_length": 2180,
"cds_start": 6443,
"cds_end": null,
"cds_length": 6543,
"cdna_start": 6541,
"cdna_end": null,
"cdna_length": 7272,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001290263.2"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6473A>T",
"hgvs_p": "p.Asp2158Val",
"transcript": "XM_047444919.1",
"protein_id": "XP_047300875.1",
"transcript_support_level": null,
"aa_start": 2158,
"aa_end": null,
"aa_length": 2190,
"cds_start": 6473,
"cds_end": null,
"cds_length": 6573,
"cdna_start": 6532,
"cdna_end": null,
"cdna_length": 7263,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444919.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6434A>T",
"hgvs_p": "p.Asp2145Val",
"transcript": "XM_047444922.1",
"protein_id": "XP_047300878.1",
"transcript_support_level": null,
"aa_start": 2145,
"aa_end": null,
"aa_length": 2177,
"cds_start": 6434,
"cds_end": null,
"cds_length": 6534,
"cdna_start": 6528,
"cdna_end": null,
"cdna_length": 7259,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444922.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6416A>T",
"hgvs_p": "p.Asp2139Val",
"transcript": "XM_047444924.1",
"protein_id": "XP_047300880.1",
"transcript_support_level": null,
"aa_start": 2139,
"aa_end": null,
"aa_length": 2171,
"cds_start": 6416,
"cds_end": null,
"cds_length": 6516,
"cdna_start": 6514,
"cdna_end": null,
"cdna_length": 7245,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444924.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 55,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6401A>T",
"hgvs_p": "p.Asp2134Val",
"transcript": "XM_047444925.1",
"protein_id": "XP_047300881.1",
"transcript_support_level": null,
"aa_start": 2134,
"aa_end": null,
"aa_length": 2166,
"cds_start": 6401,
"cds_end": null,
"cds_length": 6501,
"cdna_start": 6460,
"cdna_end": null,
"cdna_length": 7191,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444925.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 55,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6353A>T",
"hgvs_p": "p.Asp2118Val",
"transcript": "XM_047444928.1",
"protein_id": "XP_047300884.1",
"transcript_support_level": null,
"aa_start": 2118,
"aa_end": null,
"aa_length": 2150,
"cds_start": 6353,
"cds_end": null,
"cds_length": 6453,
"cdna_start": 6412,
"cdna_end": null,
"cdna_length": 7143,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444928.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 55,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6314A>T",
"hgvs_p": "p.Asp2105Val",
"transcript": "XM_047444930.1",
"protein_id": "XP_047300886.1",
"transcript_support_level": null,
"aa_start": 2105,
"aa_end": null,
"aa_length": 2137,
"cds_start": 6314,
"cds_end": null,
"cds_length": 6414,
"cdna_start": 6408,
"cdna_end": null,
"cdna_length": 7139,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444930.1"
},
{
"aa_ref": "D",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 55,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6296A>T",
"hgvs_p": "p.Asp2099Val",
"transcript": "XM_047444931.1",
"protein_id": "XP_047300887.1",
"transcript_support_level": null,
"aa_start": 2099,
"aa_end": null,
"aa_length": 2131,
"cds_start": 6296,
"cds_end": null,
"cds_length": 6396,
"cdna_start": 6394,
"cdna_end": null,
"cdna_length": 7125,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444931.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.1284A>T",
"hgvs_p": "p.Arg428Arg",
"transcript": "ENST00000698072.1",
"protein_id": "ENSP00000513544.1",
"transcript_support_level": null,
"aa_start": 428,
"aa_end": null,
"aa_length": 442,
"cds_start": 1284,
"cds_end": null,
"cds_length": 1329,
"cdna_start": 1286,
"cdna_end": null,
"cdna_length": 1929,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000698072.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 57,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6576A>T",
"hgvs_p": "p.Arg2192Arg",
"transcript": "XM_006712617.5",
"protein_id": "XP_006712680.1",
"transcript_support_level": null,
"aa_start": 2192,
"aa_end": null,
"aa_length": 2206,
"cds_start": 6576,
"cds_end": null,
"cds_length": 6621,
"cdna_start": 6635,
"cdna_end": null,
"cdna_length": 7366,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006712617.5"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 57,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6549A>T",
"hgvs_p": "p.Arg2183Arg",
"transcript": "XM_017004447.2",
"protein_id": "XP_016859936.1",
"transcript_support_level": null,
"aa_start": 2183,
"aa_end": null,
"aa_length": 2197,
"cds_start": 6549,
"cds_end": null,
"cds_length": 6594,
"cdna_start": 6608,
"cdna_end": null,
"cdna_length": 7339,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017004447.2"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 57,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6537A>T",
"hgvs_p": "p.Arg2179Arg",
"transcript": "XM_047444918.1",
"protein_id": "XP_047300874.1",
"transcript_support_level": null,
"aa_start": 2179,
"aa_end": null,
"aa_length": 2193,
"cds_start": 6537,
"cds_end": null,
"cds_length": 6582,
"cdna_start": 6631,
"cdna_end": null,
"cdna_length": 7362,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444918.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 57,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6519A>T",
"hgvs_p": "p.Arg2173Arg",
"transcript": "XM_047444920.1",
"protein_id": "XP_047300876.1",
"transcript_support_level": null,
"aa_start": 2173,
"aa_end": null,
"aa_length": 2187,
"cds_start": 6519,
"cds_end": null,
"cds_length": 6564,
"cdna_start": 6617,
"cdna_end": null,
"cdna_length": 7348,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444920.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 57,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6510A>T",
"hgvs_p": "p.Arg2170Arg",
"transcript": "XM_047444921.1",
"protein_id": "XP_047300877.1",
"transcript_support_level": null,
"aa_start": 2170,
"aa_end": null,
"aa_length": 2184,
"cds_start": 6510,
"cds_end": null,
"cds_length": 6555,
"cdna_start": 6604,
"cdna_end": null,
"cdna_length": 7335,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444921.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6477A>T",
"hgvs_p": "p.Arg2159Arg",
"transcript": "XM_047444923.1",
"protein_id": "XP_047300879.1",
"transcript_support_level": null,
"aa_start": 2159,
"aa_end": null,
"aa_length": 2173,
"cds_start": 6477,
"cds_end": null,
"cds_length": 6522,
"cdna_start": 6536,
"cdna_end": null,
"cdna_length": 7267,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444923.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6450A>T",
"hgvs_p": "p.Arg2150Arg",
"transcript": "XM_047444926.1",
"protein_id": "XP_047300882.1",
"transcript_support_level": null,
"aa_start": 2150,
"aa_end": null,
"aa_length": 2164,
"cds_start": 6450,
"cds_end": null,
"cds_length": 6495,
"cdna_start": 6509,
"cdna_end": null,
"cdna_length": 7240,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444926.1"
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 56,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK10",
"gene_hgnc_id": 23479,
"hgvs_c": "c.6429A>T",
"hgvs_p": "p.Arg2143Arg",
"transcript": "XM_047444927.1",
"protein_id": "XP_047300883.1",
"transcript_support_level": null,
"aa_start": 2143,
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{
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],
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"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.11763620376586914,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.246,
"revel_prediction": "Benign",
"alphamissense_score": 0.0839,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.37,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 3.349,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
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"acmg_by_gene": [
{
"score": 0,
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"pathogenic_score": 2,
"criteria": [
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"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001363762.1",
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"effects": [
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],
"inheritance_mode": "AR",
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}