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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-233281146-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=233281146&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 233281146,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001363742.2",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1102G>A",
"hgvs_p": "p.Gly368Arg",
"transcript": "NM_030803.7",
"protein_id": "NP_110430.5",
"transcript_support_level": null,
"aa_start": 368,
"aa_end": null,
"aa_length": 607,
"cds_start": 1102,
"cds_end": null,
"cds_length": 1824,
"cdna_start": 1257,
"cdna_end": null,
"cdna_length": 3298,
"mane_select": "ENST00000392017.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_030803.7"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1102G>A",
"hgvs_p": "p.Gly368Arg",
"transcript": "ENST00000392017.9",
"protein_id": "ENSP00000375872.4",
"transcript_support_level": 1,
"aa_start": 368,
"aa_end": null,
"aa_length": 607,
"cds_start": 1102,
"cds_end": null,
"cds_length": 1824,
"cdna_start": 1257,
"cdna_end": null,
"cdna_length": 3298,
"mane_select": "NM_030803.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392017.9"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1045G>A",
"hgvs_p": "p.Gly349Arg",
"transcript": "ENST00000392020.8",
"protein_id": "ENSP00000375875.4",
"transcript_support_level": 1,
"aa_start": 349,
"aa_end": null,
"aa_length": 588,
"cds_start": 1045,
"cds_end": null,
"cds_length": 1767,
"cdna_start": 1167,
"cdna_end": null,
"cdna_length": 3213,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392020.8"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.613G>A",
"hgvs_p": "p.Gly205Arg",
"transcript": "ENST00000347464.9",
"protein_id": "ENSP00000318259.6",
"transcript_support_level": 1,
"aa_start": 205,
"aa_end": null,
"aa_length": 444,
"cds_start": 613,
"cds_end": null,
"cds_length": 1335,
"cdna_start": 870,
"cdna_end": null,
"cdna_length": 2915,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000347464.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "n.*983G>A",
"hgvs_p": null,
"transcript": "ENST00000392021.7",
"protein_id": "ENSP00000375876.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3301,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000392021.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "n.1248G>A",
"hgvs_p": null,
"transcript": "ENST00000479942.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3559,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000479942.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "n.*983G>A",
"hgvs_p": null,
"transcript": "ENST00000392021.7",
"protein_id": "ENSP00000375876.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3301,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000392021.7"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1177G>A",
"hgvs_p": "p.Gly393Arg",
"transcript": "ENST00000962356.1",
"protein_id": "ENSP00000632415.1",
"transcript_support_level": null,
"aa_start": 393,
"aa_end": null,
"aa_length": 632,
"cds_start": 1177,
"cds_end": null,
"cds_length": 1899,
"cdna_start": 1345,
"cdna_end": null,
"cdna_length": 3381,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962356.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1153G>A",
"hgvs_p": "p.Gly385Arg",
"transcript": "NM_001363742.2",
"protein_id": "NP_001350671.1",
"transcript_support_level": null,
"aa_start": 385,
"aa_end": null,
"aa_length": 624,
"cds_start": 1153,
"cds_end": null,
"cds_length": 1875,
"cdna_start": 1308,
"cdna_end": null,
"cdna_length": 3349,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001363742.2"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1153G>A",
"hgvs_p": "p.Gly385Arg",
"transcript": "ENST00000392018.1",
"protein_id": "ENSP00000375873.1",
"transcript_support_level": 5,
"aa_start": 385,
"aa_end": null,
"aa_length": 624,
"cds_start": 1153,
"cds_end": null,
"cds_length": 1875,
"cdna_start": 1267,
"cdna_end": null,
"cdna_length": 3313,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392018.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1099G>A",
"hgvs_p": "p.Gly367Arg",
"transcript": "ENST00000962361.1",
"protein_id": "ENSP00000632420.1",
"transcript_support_level": null,
"aa_start": 367,
"aa_end": null,
"aa_length": 606,
"cds_start": 1099,
"cds_end": null,
"cds_length": 1821,
"cdna_start": 1244,
"cdna_end": null,
"cdna_length": 3283,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962361.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1096G>A",
"hgvs_p": "p.Gly366Arg",
"transcript": "ENST00000962354.1",
"protein_id": "ENSP00000632413.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 605,
"cds_start": 1096,
"cds_end": null,
"cds_length": 1818,
"cdna_start": 1285,
"cdna_end": null,
"cdna_length": 3330,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962354.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1057G>A",
"hgvs_p": "p.Gly353Arg",
"transcript": "ENST00000905940.1",
"protein_id": "ENSP00000575999.1",
"transcript_support_level": null,
"aa_start": 353,
"aa_end": null,
"aa_length": 592,
"cds_start": 1057,
"cds_end": null,
"cds_length": 1779,
"cdna_start": 1181,
"cdna_end": null,
"cdna_length": 3227,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000905940.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1045G>A",
"hgvs_p": "p.Gly349Arg",
"transcript": "NM_017974.4",
"protein_id": "NP_060444.3",
"transcript_support_level": null,
"aa_start": 349,
"aa_end": null,
"aa_length": 588,
"cds_start": 1045,
"cds_end": null,
"cds_length": 1767,
"cdna_start": 1200,
"cdna_end": null,
"cdna_length": 3241,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017974.4"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.1102G>A",
"hgvs_p": "p.Gly368Arg",
"transcript": "ENST00000962355.1",
"protein_id": "ENSP00000632414.1",
"transcript_support_level": null,
"aa_start": 368,
"aa_end": null,
"aa_length": 583,
"cds_start": 1102,
"cds_end": null,
"cds_length": 1752,
"cdna_start": 1289,
"cdna_end": null,
"cdna_length": 3255,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962355.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.850G>A",
"hgvs_p": "p.Gly284Arg",
"transcript": "NM_001190266.2",
"protein_id": "NP_001177195.1",
"transcript_support_level": null,
"aa_start": 284,
"aa_end": null,
"aa_length": 523,
"cds_start": 850,
"cds_end": null,
"cds_length": 1572,
"cdna_start": 1255,
"cdna_end": null,
"cdna_length": 3296,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001190266.2"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.793G>A",
"hgvs_p": "p.Gly265Arg",
"transcript": "ENST00000905941.1",
"protein_id": "ENSP00000576000.1",
"transcript_support_level": null,
"aa_start": 265,
"aa_end": null,
"aa_length": 504,
"cds_start": 793,
"cds_end": null,
"cds_length": 1515,
"cdna_start": 918,
"cdna_end": null,
"cdna_length": 2959,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000905941.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.754G>A",
"hgvs_p": "p.Gly252Arg",
"transcript": "NM_001190267.2",
"protein_id": "NP_001177196.1",
"transcript_support_level": null,
"aa_start": 252,
"aa_end": null,
"aa_length": 491,
"cds_start": 754,
"cds_end": null,
"cds_length": 1476,
"cdna_start": 1253,
"cdna_end": null,
"cdna_length": 3294,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001190267.2"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.670G>A",
"hgvs_p": "p.Gly224Arg",
"transcript": "ENST00000905939.1",
"protein_id": "ENSP00000575998.1",
"transcript_support_level": null,
"aa_start": 224,
"aa_end": null,
"aa_length": 463,
"cds_start": 670,
"cds_end": null,
"cds_length": 1392,
"cdna_start": 838,
"cdna_end": null,
"cdna_length": 2884,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000905939.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.664G>A",
"hgvs_p": "p.Gly222Arg",
"transcript": "ENST00000962358.1",
"protein_id": "ENSP00000632417.1",
"transcript_support_level": null,
"aa_start": 222,
"aa_end": null,
"aa_length": 461,
"cds_start": 664,
"cds_end": null,
"cds_length": 1386,
"cdna_start": 814,
"cdna_end": null,
"cdna_length": 2859,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962358.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.640G>A",
"hgvs_p": "p.Gly214Arg",
"transcript": "ENST00000962359.1",
"protein_id": "ENSP00000632418.1",
"transcript_support_level": null,
"aa_start": 214,
"aa_end": null,
"aa_length": 453,
"cds_start": 640,
"cds_end": null,
"cds_length": 1362,
"cdna_start": 785,
"cdna_end": null,
"cdna_length": 2831,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962359.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATG16L1",
"gene_hgnc_id": 21498,
"hgvs_c": "c.625G>A",
"hgvs_p": "p.Gly209Arg",
"transcript": "ENST00000962360.1",
"protein_id": "ENSP00000632419.1",
"transcript_support_level": null,
"aa_start": 209,
"aa_end": null,
"aa_length": 448,
"cds_start": 625,
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{
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"verdict": "Uncertain_significance",
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}