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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-23900669-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=23900669&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 23900669,
"ref": "C",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_001354107.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "NM_017552.4",
"protein_id": "NP_060022.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1458,
"cds_start": null,
"cds_end": null,
"cds_length": 4377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000238789.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017552.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000238789.10",
"protein_id": "ENSP00000238789.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1458,
"cds_start": null,
"cds_end": null,
"cds_length": 4377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_017552.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000238789.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000439915.1",
"protein_id": "ENSP00000403177.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 369,
"cds_start": null,
"cds_end": null,
"cds_length": 1111,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000439915.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "NM_001354107.2",
"protein_id": "NP_001341036.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1467,
"cds_start": null,
"cds_end": null,
"cds_length": 4404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001354107.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "NM_001242338.3",
"protein_id": "NP_001229267.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1453,
"cds_start": null,
"cds_end": null,
"cds_length": 4362,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001242338.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000925212.1",
"protein_id": "ENSP00000595271.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1440,
"cds_start": null,
"cds_end": null,
"cds_length": 4323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925212.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000925213.1",
"protein_id": "ENSP00000595272.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1368,
"cds_start": null,
"cds_end": null,
"cds_length": 4107,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925213.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000925211.1",
"protein_id": "ENSP00000595270.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1363,
"cds_start": null,
"cds_end": null,
"cds_length": 4092,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925211.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "ENST00000925214.1",
"protein_id": "ENSP00000595273.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1230,
"cds_start": null,
"cds_end": null,
"cds_length": 3693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925214.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_047444799.1",
"protein_id": "XP_047300755.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1522,
"cds_start": null,
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"cds_length": 4569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047444799.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_011532918.4",
"protein_id": "XP_011531220.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1511,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"feature": "XM_011532918.4"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 1,
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"gene_symbol": "ATAD2B",
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"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_011532919.4",
"protein_id": "XP_011531221.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_011532919.4"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 28,
"intron_rank": 1,
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"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
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"transcript": "XM_011532920.4",
"protein_id": "XP_011531222.1",
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_011532920.4"
},
{
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"strand": false,
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],
"exon_rank": null,
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"gene_symbol": "ATAD2B",
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"hgvs_c": "c.217-4699G>T",
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"transcript": "XM_005264372.5",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 29,
"intron_rank": 1,
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"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_006712030.5",
"protein_id": "XP_006712093.1",
"transcript_support_level": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
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],
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"exon_count": 24,
"intron_rank": 1,
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"gene_symbol": "ATAD2B",
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"hgvs_c": "c.217-4699G>T",
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"transcript": "XM_011532924.4",
"protein_id": "XP_011531226.1",
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"biotype": "protein_coding",
"feature": "XM_011532924.4"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 1,
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"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_011532925.4",
"protein_id": "XP_011531227.1",
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_006712031.5",
"protein_id": "XP_006712094.1",
"transcript_support_level": null,
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"feature": "XM_006712031.5"
},
{
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "ATAD2B",
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"hgvs_c": "c.217-4699G>T",
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"transcript": "XM_047444800.1",
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},
{
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"strand": false,
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],
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"intron_rank": 1,
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"gene_symbol": "ATAD2B",
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"transcript": "XM_047444801.1",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
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"intron_rank": 1,
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"gene_symbol": "ATAD2B",
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"hgvs_c": "c.217-4699G>T",
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"transcript": "XM_047444802.1",
"protein_id": "XP_047300758.1",
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"biotype": "protein_coding",
"feature": "XM_047444802.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ATAD2B",
"gene_hgnc_id": 29230,
"hgvs_c": "c.217-4699G>T",
"hgvs_p": null,
"transcript": "XM_047444803.1",
"protein_id": "XP_047300759.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_047444803.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
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}