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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-24208255-GCTT-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=24208255&ref=GCTT&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 24208255,
      "ref": "GCTT",
      "alt": "G",
      "effect": "conservative_inframe_deletion",
      "transcript": "NM_006277.3",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del",
          "transcript": "NM_006277.3",
          "protein_id": "NP_006268.2",
          "transcript_support_level": null,
          "aa_start": 1553,
          "aa_end": null,
          "aa_length": 1697,
          "cds_start": 4657,
          "cds_end": null,
          "cds_length": 5094,
          "cdna_start": 4925,
          "cdna_end": null,
          "cdna_length": 6122,
          "mane_select": "ENST00000355123.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006277.3"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del",
          "transcript": "ENST00000355123.9",
          "protein_id": "ENSP00000347244.4",
          "transcript_support_level": 1,
          "aa_start": 1553,
          "aa_end": null,
          "aa_length": 1697,
          "cds_start": 4657,
          "cds_end": null,
          "cds_length": 5094,
          "cdna_start": 4925,
          "cdna_end": null,
          "cdna_length": 6122,
          "mane_select": "NM_006277.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000355123.9"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4576_4578delAAG",
          "hgvs_p": "p.Lys1526del",
          "transcript": "ENST00000361999.7",
          "protein_id": "ENSP00000354561.2",
          "transcript_support_level": 1,
          "aa_start": 1526,
          "aa_end": null,
          "aa_length": 1670,
          "cds_start": 4576,
          "cds_end": null,
          "cds_length": 5013,
          "cdna_start": 4617,
          "cdna_end": null,
          "cdna_length": 5814,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000361999.7"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4618_4620delAAG",
          "hgvs_p": "p.Lys1540del",
          "transcript": "ENST00000905943.1",
          "protein_id": "ENSP00000576002.1",
          "transcript_support_level": null,
          "aa_start": 1540,
          "aa_end": null,
          "aa_length": 1684,
          "cds_start": 4618,
          "cds_end": null,
          "cds_length": 5055,
          "cdna_start": 5157,
          "cdna_end": null,
          "cdna_length": 6351,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000905943.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4615_4617delAAG",
          "hgvs_p": "p.Lys1539del",
          "transcript": "NM_001348181.2",
          "protein_id": "NP_001335110.1",
          "transcript_support_level": null,
          "aa_start": 1539,
          "aa_end": null,
          "aa_length": 1683,
          "cds_start": 4615,
          "cds_end": null,
          "cds_length": 5052,
          "cdna_start": 4992,
          "cdna_end": null,
          "cdna_length": 6189,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348181.2"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4576_4578delAAG",
          "hgvs_p": "p.Lys1526del",
          "transcript": "NM_019595.4",
          "protein_id": "NP_062541.3",
          "transcript_support_level": null,
          "aa_start": 1526,
          "aa_end": null,
          "aa_length": 1670,
          "cds_start": 4576,
          "cds_end": null,
          "cds_length": 5013,
          "cdna_start": 4844,
          "cdna_end": null,
          "cdna_length": 6041,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_019595.4"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4543_4545delAAG",
          "hgvs_p": "p.Lys1515del",
          "transcript": "ENST00000926830.1",
          "protein_id": "ENSP00000596889.1",
          "transcript_support_level": null,
          "aa_start": 1515,
          "aa_end": null,
          "aa_length": 1659,
          "cds_start": 4543,
          "cds_end": null,
          "cds_length": 4980,
          "cdna_start": 4723,
          "cdna_end": null,
          "cdna_length": 5920,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000926830.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4537_4539delAAG",
          "hgvs_p": "p.Lys1513del",
          "transcript": "NM_001348182.2",
          "protein_id": "NP_001335111.1",
          "transcript_support_level": null,
          "aa_start": 1513,
          "aa_end": null,
          "aa_length": 1657,
          "cds_start": 4537,
          "cds_end": null,
          "cds_length": 4974,
          "cdna_start": 4805,
          "cdna_end": null,
          "cdna_length": 6002,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348182.2"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4537_4539delAAG",
          "hgvs_p": "p.Lys1513del",
          "transcript": "ENST00000905942.1",
          "protein_id": "ENSP00000576001.1",
          "transcript_support_level": null,
          "aa_start": 1513,
          "aa_end": null,
          "aa_length": 1657,
          "cds_start": 4537,
          "cds_end": null,
          "cds_length": 4974,
          "cdna_start": 5076,
          "cdna_end": null,
          "cdna_length": 6270,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000905942.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4537_4539delAAG",
          "hgvs_p": "p.Lys1513del",
          "transcript": "ENST00000926831.1",
          "protein_id": "ENSP00000596890.1",
          "transcript_support_level": null,
          "aa_start": 1513,
          "aa_end": null,
          "aa_length": 1657,
          "cds_start": 4537,
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          "cdna_start": 5037,
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          "cdna_length": 6234,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "K",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "conservative_inframe_deletion"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del",
          "transcript": "XM_024452930.2",
          "protein_id": "XP_024308698.1",
          "transcript_support_level": null,
          "aa_start": 1553,
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          "aa_length": 1697,
          "cds_start": 4657,
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          "cdna_start": 4803,
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          "cdna_length": 6000,
          "mane_select": null,
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        },
        {
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          "canonical": false,
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          "consequences": [
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          ],
          "exon_rank": 37,
          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del",
          "transcript": "XM_024452931.2",
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        },
        {
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          "protein_coding": true,
          "strand": false,
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          ],
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          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del",
          "transcript": "XM_047444582.1",
          "protein_id": "XP_047300538.1",
          "transcript_support_level": null,
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          "aa_length": 1697,
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          "cdna_start": 4857,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_047444582.1"
        },
        {
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          "canonical": false,
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          "strand": false,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ITSN2",
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          "hgvs_c": "c.4618_4620delAAG",
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          "transcript": "XM_024452933.2",
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          "intron_rank": null,
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          "gene_symbol": "ITSN2",
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          "hgvs_c": "c.4615_4617delAAG",
          "hgvs_p": "p.Lys1539del",
          "transcript": "XM_024452932.2",
          "protein_id": "XP_024308700.1",
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          "intron_rank": null,
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          "transcript": "XM_047444584.1",
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        {
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          "gene_symbol": "ITSN2",
          "gene_hgnc_id": 6184,
          "hgvs_c": "c.4576_4578delAAG",
          "hgvs_p": "p.Lys1526del",
          "transcript": "XM_047444583.1",
          "protein_id": "XP_047300539.1",
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          "biotype": "protein_coding",
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        },
        {
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          "consequences": [
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          "exon_count": 39,
          "intron_rank": null,
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        {
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          "biotype": "nonsense_mediated_decay",
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      ],
      "gene_symbol": "ITSN2",
      "gene_hgnc_id": 6184,
      "dbsnp": "rs767013225",
      "frequency_reference_population": 0.00025489542,
      "hom_count_reference_population": 2,
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      "gnomad_exomes_af": 0.000253362,
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      "gnomad_exomes_homalt": 2,
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": null,
      "alphamissense_score": null,
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      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 5.703,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
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      "acmg_score": -4,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM4_Supporting,BP6,BS2",
      "acmg_by_gene": [
        {
          "score": -4,
          "benign_score": 5,
          "pathogenic_score": 1,
          "criteria": [
            "PM4_Supporting",
            "BP6",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_006277.3",
          "gene_symbol": "ITSN2",
          "hgnc_id": 6184,
          "effects": [
            "conservative_inframe_deletion"
          ],
          "inheritance_mode": "",
          "hgvs_c": "c.4657_4659delAAG",
          "hgvs_p": "p.Lys1553del"
        }
      ],
      "clinvar_disease": "ITSN2-related disorder",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "ITSN2-related disorder",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.