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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-24820010-CAAG-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=24820010&ref=CAAG&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 24820010,
      "ref": "CAAG",
      "alt": "C",
      "effect": "disruptive_inframe_deletion",
      "transcript": "NM_001377128.1",
      "consequences": [
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3354_3356delCTT",
          "hgvs_p": "p.Phe1118del",
          "transcript": "NM_004036.5",
          "protein_id": "NP_004027.2",
          "transcript_support_level": null,
          "aa_start": 1118,
          "aa_end": null,
          "aa_length": 1144,
          "cds_start": 3354,
          "cds_end": null,
          "cds_length": 3435,
          "cdna_start": 4108,
          "cdna_end": null,
          "cdna_length": 4950,
          "mane_select": "ENST00000679454.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_004036.5"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3354_3356delCTT",
          "hgvs_p": "p.Phe1118del",
          "transcript": "ENST00000679454.1",
          "protein_id": "ENSP00000505261.1",
          "transcript_support_level": null,
          "aa_start": 1118,
          "aa_end": null,
          "aa_length": 1144,
          "cds_start": 3354,
          "cds_end": null,
          "cds_length": 3435,
          "cdna_start": 4108,
          "cdna_end": null,
          "cdna_length": 4950,
          "mane_select": "NM_004036.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000679454.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3357_3359delCTT",
          "hgvs_p": "p.Phe1119del",
          "transcript": "ENST00000405392.6",
          "protein_id": "ENSP00000384484.2",
          "transcript_support_level": 1,
          "aa_start": 1119,
          "aa_end": null,
          "aa_length": 1145,
          "cds_start": 3357,
          "cds_end": null,
          "cds_length": 3438,
          "cdna_start": 3359,
          "cdna_end": null,
          "cdna_length": 4182,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405392.6"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3354_3356delCTT",
          "hgvs_p": "p.Phe1118del",
          "transcript": "ENST00000260600.9",
          "protein_id": "ENSP00000260600.5",
          "transcript_support_level": 1,
          "aa_start": 1118,
          "aa_end": null,
          "aa_length": 1144,
          "cds_start": 3354,
          "cds_end": null,
          "cds_length": 3435,
          "cdna_start": 4208,
          "cdna_end": null,
          "cdna_length": 5050,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000260600.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CENPO",
          "gene_hgnc_id": 28152,
          "hgvs_c": "c.*699_*701delAAG",
          "hgvs_p": null,
          "transcript": "NM_001322101.2",
          "protein_id": "NP_001309030.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 300,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 903,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4106,
          "mane_select": "ENST00000380834.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001322101.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CENPO",
          "gene_hgnc_id": 28152,
          "hgvs_c": "c.*699_*701delAAG",
          "hgvs_p": null,
          "transcript": "ENST00000380834.7",
          "protein_id": "ENSP00000370214.2",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 300,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 903,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4106,
          "mane_select": "NM_001322101.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000380834.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CENPO",
          "gene_hgnc_id": 28152,
          "hgvs_c": "c.*699_*701delAAG",
          "hgvs_p": null,
          "transcript": "ENST00000260662.2",
          "protein_id": "ENSP00000260662.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 300,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 903,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4085,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000260662.2"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3435_3437delCTT",
          "hgvs_p": "p.Phe1145del",
          "transcript": "ENST00000912214.1",
          "protein_id": "ENSP00000582273.1",
          "transcript_support_level": null,
          "aa_start": 1145,
          "aa_end": null,
          "aa_length": 1171,
          "cds_start": 3435,
          "cds_end": null,
          "cds_length": 3516,
          "cdna_start": 3900,
          "cdna_end": null,
          "cdna_length": 4742,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912214.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3420_3422delCTT",
          "hgvs_p": "p.Phe1140del",
          "transcript": "NM_001377128.1",
          "protein_id": "NP_001364057.1",
          "transcript_support_level": null,
          "aa_start": 1140,
          "aa_end": null,
          "aa_length": 1166,
          "cds_start": 3420,
          "cds_end": null,
          "cds_length": 3501,
          "cdna_start": 4174,
          "cdna_end": null,
          "cdna_length": 5016,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001377128.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3420_3422delCTT",
          "hgvs_p": "p.Phe1140del",
          "transcript": "ENST00000867857.1",
          "protein_id": "ENSP00000537916.1",
          "transcript_support_level": null,
          "aa_start": 1140,
          "aa_end": null,
          "aa_length": 1166,
          "cds_start": 3420,
          "cds_end": null,
          "cds_length": 3501,
          "cdna_start": 4158,
          "cdna_end": null,
          "cdna_length": 5000,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000867857.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3414_3416delCTT",
          "hgvs_p": "p.Phe1138del",
          "transcript": "ENST00000948883.1",
          "protein_id": "ENSP00000618942.1",
          "transcript_support_level": null,
          "aa_start": 1138,
          "aa_end": null,
          "aa_length": 1164,
          "cds_start": 3414,
          "cds_end": null,
          "cds_length": 3495,
          "cdna_start": 4133,
          "cdna_end": null,
          "cdna_length": 4969,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000948883.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3411_3413delCTT",
          "hgvs_p": "p.Phe1137del",
          "transcript": "ENST00000912212.1",
          "protein_id": "ENSP00000582271.1",
          "transcript_support_level": null,
          "aa_start": 1137,
          "aa_end": null,
          "aa_length": 1163,
          "cds_start": 3411,
          "cds_end": null,
          "cds_length": 3492,
          "cdna_start": 4129,
          "cdna_end": null,
          "cdna_length": 4971,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912212.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3372_3374delCTT",
          "hgvs_p": "p.Phe1124del",
          "transcript": "ENST00000948874.1",
          "protein_id": "ENSP00000618933.1",
          "transcript_support_level": null,
          "aa_start": 1124,
          "aa_end": null,
          "aa_length": 1150,
          "cds_start": 3372,
          "cds_end": null,
          "cds_length": 3453,
          "cdna_start": 4188,
          "cdna_end": null,
          "cdna_length": 5027,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000948874.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3369_3371delCTT",
          "hgvs_p": "p.Phe1123del",
          "transcript": "ENST00000948876.1",
          "protein_id": "ENSP00000618935.1",
          "transcript_support_level": null,
          "aa_start": 1123,
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          "aa_length": 1149,
          "cds_start": 3369,
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          "cdna_start": 4130,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000948876.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3357_3359delCTT",
          "hgvs_p": "p.Phe1119del",
          "transcript": "NM_001320613.2",
          "protein_id": "NP_001307542.1",
          "transcript_support_level": null,
          "aa_start": 1119,
          "aa_end": null,
          "aa_length": 1145,
          "cds_start": 3357,
          "cds_end": null,
          "cds_length": 3438,
          "cdna_start": 4111,
          "cdna_end": null,
          "cdna_length": 4953,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001320613.2"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3354_3356delCTT",
          "hgvs_p": "p.Phe1118del",
          "transcript": "NM_001377132.1",
          "protein_id": "NP_001364061.1",
          "transcript_support_level": null,
          "aa_start": 1118,
          "aa_end": null,
          "aa_length": 1144,
          "cds_start": 3354,
          "cds_end": null,
          "cds_length": 3435,
          "cdna_start": 3665,
          "cdna_end": null,
          "cdna_length": 4507,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001377132.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3354_3356delCTT",
          "hgvs_p": "p.Phe1118del",
          "transcript": "ENST00000948882.1",
          "protein_id": "ENSP00000618941.1",
          "transcript_support_level": null,
          "aa_start": 1118,
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          "cdna_start": 4066,
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          "cdna_length": 4905,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000948882.1"
        },
        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3351_3353delCTT",
          "hgvs_p": "p.Phe1117del",
          "transcript": "ENST00000912211.1",
          "protein_id": "ENSP00000582270.1",
          "transcript_support_level": null,
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          "aa_length": 1143,
          "cds_start": 3351,
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          "cdna_start": 4104,
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          "cdna_length": 4946,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000912211.1"
        },
        {
          "aa_ref": "FL",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
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          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADCY3",
          "gene_hgnc_id": 234,
          "hgvs_c": "c.3351_3353delCTT",
          "hgvs_p": "p.Phe1117del",
          "transcript": "ENST00000948879.1",
          "protein_id": "ENSP00000618938.1",
          "transcript_support_level": null,
          "aa_start": 1117,
          "aa_end": null,
          "aa_length": 1143,
          "cds_start": 3351,
          "cds_end": null,
          "cds_length": 3432,
          "cdna_start": 4088,
          "cdna_end": null,
          "cdna_length": 4927,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000948879.1"
        },
        {
          "aa_ref": "FL",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
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      "splice_prediction_selected": "Benign",
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      "phylop100way_score": 9.246,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
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            "PM4_Supporting"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_001377128.1",
          "gene_symbol": "ADCY3",
          "hgnc_id": 234,
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        {
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          "transcript": "NM_024322.4",
          "gene_symbol": "CENPO",
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      "clinvar_disease": "ADCY3-related disorder,BODY MASS INDEX QUANTITATIVE TRAIT LOCUS 19",
      "clinvar_classification": " risk factor,Uncertain significance",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "BODY MASS INDEX QUANTITATIVE TRAIT LOCUS 19|ADCY3-related disorder",
      "pathogenicity_classification_combined": "Uncertain significance; risk factor",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.