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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-27200503-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=27200503&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 27200503,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_021095.4",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "NM_021095.4",
"protein_id": "NP_066918.2",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2297,
"cdna_end": null,
"cdna_length": 3213,
"mane_select": "ENST00000310574.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_021095.4"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000310574.8",
"protein_id": "ENSP00000310208.3",
"transcript_support_level": 1,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2297,
"cdna_end": null,
"cdna_length": 3213,
"mane_select": "NM_021095.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000310574.8"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000408041.5",
"protein_id": "ENSP00000384853.1",
"transcript_support_level": 1,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2163,
"cdna_end": null,
"cdna_length": 2230,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000408041.5"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1874T>G",
"hgvs_p": "p.Met625Arg",
"transcript": "ENST00000892752.1",
"protein_id": "ENSP00000562811.1",
"transcript_support_level": null,
"aa_start": 625,
"aa_end": null,
"aa_length": 646,
"cds_start": 1874,
"cds_end": null,
"cds_length": 1941,
"cdna_start": 2325,
"cdna_end": null,
"cdna_length": 3241,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892752.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892748.1",
"protein_id": "ENSP00000562807.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2233,
"cdna_end": null,
"cdna_length": 3149,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892748.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892751.1",
"protein_id": "ENSP00000562810.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2365,
"cdna_end": null,
"cdna_length": 3281,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892751.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892753.1",
"protein_id": "ENSP00000562812.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2250,
"cdna_end": null,
"cdna_length": 3163,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892753.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892754.1",
"protein_id": "ENSP00000562813.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2122,
"cdna_end": null,
"cdna_length": 3033,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892754.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892755.1",
"protein_id": "ENSP00000562814.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2167,
"cdna_end": null,
"cdna_length": 3083,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892755.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892756.1",
"protein_id": "ENSP00000562815.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2148,
"cdna_end": null,
"cdna_length": 3064,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892756.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000892757.1",
"protein_id": "ENSP00000562816.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2504,
"cdna_end": null,
"cdna_length": 3417,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892757.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000926531.1",
"protein_id": "ENSP00000596590.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2112,
"cdna_end": null,
"cdna_length": 3028,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926531.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000926534.1",
"protein_id": "ENSP00000596593.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2269,
"cdna_end": null,
"cdna_length": 3185,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926534.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000926537.1",
"protein_id": "ENSP00000596596.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2288,
"cdna_end": null,
"cdna_length": 3204,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926537.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000962472.1",
"protein_id": "ENSP00000632531.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2501,
"cdna_end": null,
"cdna_length": 3415,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962472.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000962473.1",
"protein_id": "ENSP00000632532.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2283,
"cdna_end": null,
"cdna_length": 3195,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962473.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000962474.1",
"protein_id": "ENSP00000632533.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
"cds_length": 1908,
"cdna_start": 2440,
"cdna_end": null,
"cdna_length": 3350,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962474.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1841T>G",
"hgvs_p": "p.Met614Arg",
"transcript": "ENST00000962475.1",
"protein_id": "ENSP00000632534.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 635,
"cds_start": 1841,
"cds_end": null,
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"cdna_start": 2145,
"cdna_end": null,
"cdna_length": 3059,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962475.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1838T>G",
"hgvs_p": "p.Met613Arg",
"transcript": "ENST00000926529.1",
"protein_id": "ENSP00000596588.1",
"transcript_support_level": null,
"aa_start": 613,
"aa_end": null,
"aa_length": 634,
"cds_start": 1838,
"cds_end": null,
"cds_length": 1905,
"cdna_start": 2290,
"cdna_end": null,
"cdna_length": 3206,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926529.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1751T>G",
"hgvs_p": "p.Met584Arg",
"transcript": "ENST00000892750.1",
"protein_id": "ENSP00000562809.1",
"transcript_support_level": null,
"aa_start": 584,
"aa_end": null,
"aa_length": 605,
"cds_start": 1751,
"cds_end": null,
"cds_length": 1818,
"cdna_start": 2212,
"cdna_end": null,
"cdna_length": 3128,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892750.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1751T>G",
"hgvs_p": "p.Met584Arg",
"transcript": "ENST00000926528.1",
"protein_id": "ENSP00000596587.1",
"transcript_support_level": null,
"aa_start": 584,
"aa_end": null,
"aa_length": 605,
"cds_start": 1751,
"cds_end": null,
"cds_length": 1818,
"cdna_start": 2169,
"cdna_end": null,
"cdna_length": 3083,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926528.1"
},
{
"aa_ref": "M",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC5A6",
"gene_hgnc_id": 11041,
"hgvs_c": "c.1748T>G",
"hgvs_p": "p.Met583Arg",
"transcript": "ENST00000892749.1",
"protein_id": "ENSP00000562808.1",
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"splice_prediction_selected": "Benign",
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{
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"verdict": "Uncertain_significance",
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"custom_annotations": null
}
],
"message": null
}