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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-27372889-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=27372889&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 27372889,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_014748.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "NM_014748.4",
"protein_id": "NP_055563.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 470,
"cds_start": null,
"cds_end": null,
"cds_length": 1413,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2357,
"mane_select": "ENST00000233575.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014748.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000233575.7",
"protein_id": "ENSP00000233575.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 470,
"cds_start": null,
"cds_end": null,
"cds_length": 1413,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2357,
"mane_select": "NM_014748.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000233575.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "n.*102-358G>C",
"hgvs_p": null,
"transcript": "ENST00000440760.5",
"protein_id": "ENSP00000399727.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1955,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000440760.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "n.64-358G>C",
"hgvs_p": null,
"transcript": "ENST00000453453.1",
"protein_id": "ENSP00000401922.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1638,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000453453.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901243.1",
"protein_id": "ENSP00000571302.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 483,
"cds_start": null,
"cds_end": null,
"cds_length": 1452,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1978,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901243.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901237.1",
"protein_id": "ENSP00000571296.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 481,
"cds_start": null,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1991,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901237.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901233.1",
"protein_id": "ENSP00000571292.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 473,
"cds_start": null,
"cds_end": null,
"cds_length": 1422,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2173,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901233.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.253+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901239.1",
"protein_id": "ENSP00000571298.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 469,
"cds_start": null,
"cds_end": null,
"cds_length": 1410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1943,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901239.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901244.1",
"protein_id": "ENSP00000571303.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 469,
"cds_start": null,
"cds_end": null,
"cds_length": 1410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1927,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901244.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000917628.1",
"protein_id": "ENSP00000587687.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 469,
"cds_start": null,
"cds_end": null,
"cds_length": 1410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2185,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000917628.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.220+149G>C",
"hgvs_p": null,
"transcript": "ENST00000917629.1",
"protein_id": "ENSP00000587688.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 469,
"cds_start": null,
"cds_end": null,
"cds_length": 1410,
"cdna_start": null,
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"cdna_length": 1951,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000917629.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000917631.1",
"protein_id": "ENSP00000587690.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 466,
"cds_start": null,
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"cds_length": 1401,
"cdna_start": null,
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"cdna_length": 1927,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000917631.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.220+149G>C",
"hgvs_p": null,
"transcript": "NM_001267059.2",
"protein_id": "NP_001253988.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 458,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 2321,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001267059.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.220+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901238.1",
"protein_id": "ENSP00000571297.1",
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"cdna_start": null,
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"feature": "ENST00000901238.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.196+149G>C",
"hgvs_p": null,
"transcript": "NM_001267061.2",
"protein_id": "NP_001253990.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 450,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 2192,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001267061.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.181+149G>C",
"hgvs_p": null,
"transcript": "NM_001267060.2",
"protein_id": "NP_001253989.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "NM_001267060.2"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.181+149G>C",
"hgvs_p": null,
"transcript": "ENST00000537606.5",
"protein_id": "ENSP00000439208.1",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000537606.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901236.1",
"protein_id": "ENSP00000571295.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901241.1",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 14,
"intron_rank": 3,
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"gene_symbol": "SNX17",
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"hgvs_c": "c.256+149G>C",
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"transcript": "ENST00000901234.1",
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},
{
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"strand": true,
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"intron_variant"
],
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"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
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"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000901240.1",
"protein_id": "ENSP00000571299.1",
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"aa_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901240.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNX17",
"gene_hgnc_id": 14979,
"hgvs_c": "c.256+149G>C",
"hgvs_p": null,
"transcript": "ENST00000917630.1",
"protein_id": "ENSP00000587689.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 431,
"cds_start": null,
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"cds_length": 1296,
"cdna_start": null,
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"cdna_length": 1829,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000917630.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
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