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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-3604363-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=3604363&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 3604363,
"ref": "T",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001255985.1",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "NM_024027.5",
"protein_id": "NP_076932.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000349077.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_024027.5"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000349077.9",
"protein_id": "ENSP00000339168.4",
"transcript_support_level": 1,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_024027.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000349077.9"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000382062.6",
"protein_id": "ENSP00000371494.2",
"transcript_support_level": 1,
"aa_start": 8,
"aa_end": null,
"aa_length": 247,
"cds_start": 23,
"cds_end": null,
"cds_length": 744,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000382062.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.-66T>A",
"hgvs_p": null,
"transcript": "ENST00000236693.11",
"protein_id": "ENSP00000236693.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 268,
"cds_start": null,
"cds_end": null,
"cds_length": 807,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000236693.11"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "n.263T>A",
"hgvs_p": null,
"transcript": "ENST00000460971.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000460971.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "n.263T>A",
"hgvs_p": null,
"transcript": "ENST00000487365.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000487365.5"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.65T>A",
"hgvs_p": "p.Val22Glu",
"transcript": "NM_001255985.1",
"protein_id": "NP_001242914.1",
"transcript_support_level": null,
"aa_start": 22,
"aa_end": null,
"aa_length": 285,
"cds_start": 65,
"cds_end": null,
"cds_length": 858,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001255985.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.65T>A",
"hgvs_p": "p.Val22Glu",
"transcript": "ENST00000418971.6",
"protein_id": "ENSP00000411770.2",
"transcript_support_level": 2,
"aa_start": 22,
"aa_end": null,
"aa_length": 285,
"cds_start": 65,
"cds_end": null,
"cds_length": 858,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000418971.6"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856326.1",
"protein_id": "ENSP00000526385.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856326.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856328.1",
"protein_id": "ENSP00000526387.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856328.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856330.1",
"protein_id": "ENSP00000526389.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856330.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856332.1",
"protein_id": "ENSP00000526391.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856332.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856334.1",
"protein_id": "ENSP00000526393.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856334.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856336.1",
"protein_id": "ENSP00000526395.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856336.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856341.1",
"protein_id": "ENSP00000526400.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856341.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856344.1",
"protein_id": "ENSP00000526403.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856344.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856345.1",
"protein_id": "ENSP00000526404.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856345.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856346.1",
"protein_id": "ENSP00000526405.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856346.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856348.1",
"protein_id": "ENSP00000526407.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856348.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856349.1",
"protein_id": "ENSP00000526408.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856349.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856350.1",
"protein_id": "ENSP00000526409.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856350.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "COLEC11",
"gene_hgnc_id": 17213,
"hgvs_c": "c.23T>A",
"hgvs_p": "p.Val8Glu",
"transcript": "ENST00000856353.1",
"protein_id": "ENSP00000526412.1",
"transcript_support_level": null,
"aa_start": 8,
"aa_end": null,
"aa_length": 271,
"cds_start": 23,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856353.1"
},
{
"aa_ref": "V",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
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{
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"BP4_Moderate"
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"verdict": "Uncertain_significance",
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{
"score": 0,
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"verdict": "Uncertain_significance",
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],
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}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}