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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-36988718-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=36988718&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 36988718,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_019024.3",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "NM_019024.3",
          "protein_id": "NP_061897.1",
          "transcript_support_level": null,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 5965,
          "cdna_end": null,
          "cdna_length": 6937,
          "mane_select": "ENST00000233099.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_019024.3"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "ENST00000233099.6",
          "protein_id": "ENSP00000233099.5",
          "transcript_support_level": 1,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 5965,
          "cdna_end": null,
          "cdna_length": 6937,
          "mane_select": "NM_019024.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000233099.6"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "ENST00000903982.1",
          "protein_id": "ENSP00000574041.1",
          "transcript_support_level": null,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 6405,
          "cdna_end": null,
          "cdna_length": 7257,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903982.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "ENST00000920714.1",
          "protein_id": "ENSP00000590773.1",
          "transcript_support_level": null,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 5942,
          "cdna_end": null,
          "cdna_length": 6810,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920714.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "ENST00000920715.1",
          "protein_id": "ENSP00000590774.1",
          "transcript_support_level": null,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 6001,
          "cdna_end": null,
          "cdna_length": 6856,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920715.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5839A>G",
          "hgvs_p": "p.Ile1947Val",
          "transcript": "ENST00000920718.1",
          "protein_id": "ENSP00000590777.1",
          "transcript_support_level": null,
          "aa_start": 1947,
          "aa_end": null,
          "aa_length": 2071,
          "cds_start": 5839,
          "cds_end": null,
          "cds_length": 6216,
          "cdna_start": 6288,
          "cdna_end": null,
          "cdna_length": 7139,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920718.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5836A>G",
          "hgvs_p": "p.Ile1946Val",
          "transcript": "ENST00000903978.1",
          "protein_id": "ENSP00000574037.1",
          "transcript_support_level": null,
          "aa_start": 1946,
          "aa_end": null,
          "aa_length": 2070,
          "cds_start": 5836,
          "cds_end": null,
          "cds_length": 6213,
          "cdna_start": 5988,
          "cdna_end": null,
          "cdna_length": 7006,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903978.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5836A>G",
          "hgvs_p": "p.Ile1946Val",
          "transcript": "ENST00000903979.1",
          "protein_id": "ENSP00000574038.1",
          "transcript_support_level": null,
          "aa_start": 1946,
          "aa_end": null,
          "aa_length": 2070,
          "cds_start": 5836,
          "cds_end": null,
          "cds_length": 6213,
          "cdna_start": 5932,
          "cdna_end": null,
          "cdna_length": 6902,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903979.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5803A>G",
          "hgvs_p": "p.Ile1935Val",
          "transcript": "ENST00000903977.1",
          "protein_id": "ENSP00000574036.1",
          "transcript_support_level": null,
          "aa_start": 1935,
          "aa_end": null,
          "aa_length": 2059,
          "cds_start": 5803,
          "cds_end": null,
          "cds_length": 6180,
          "cdna_start": 5907,
          "cdna_end": null,
          "cdna_length": 7301,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903977.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5746A>G",
          "hgvs_p": "p.Ile1916Val",
          "transcript": "ENST00000903981.1",
          "protein_id": "ENSP00000574040.1",
          "transcript_support_level": null,
          "aa_start": 1916,
          "aa_end": null,
          "aa_length": 2040,
          "cds_start": 5746,
          "cds_end": null,
          "cds_length": 6123,
          "cdna_start": 5846,
          "cdna_end": null,
          "cdna_length": 6702,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903981.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5584A>G",
          "hgvs_p": "p.Ile1862Val",
          "transcript": "ENST00000920717.1",
          "protein_id": "ENSP00000590776.1",
          "transcript_support_level": null,
          "aa_start": 1862,
          "aa_end": null,
          "aa_length": 1986,
          "cds_start": 5584,
          "cds_end": null,
          "cds_length": 5961,
          "cdna_start": 5681,
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          "cdna_length": 6538,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5572A>G",
          "hgvs_p": "p.Ile1858Val",
          "transcript": "ENST00000903980.1",
          "protein_id": "ENSP00000574039.1",
          "transcript_support_level": null,
          "aa_start": 1858,
          "aa_end": null,
          "aa_length": 1982,
          "cds_start": 5572,
          "cds_end": null,
          "cds_length": 5949,
          "cdna_start": 5674,
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          "cdna_length": 6534,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903980.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 33,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5509A>G",
          "hgvs_p": "p.Ile1837Val",
          "transcript": "ENST00000920713.1",
          "protein_id": "ENSP00000590772.1",
          "transcript_support_level": null,
          "aa_start": 1837,
          "aa_end": null,
          "aa_length": 1961,
          "cds_start": 5509,
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          "cds_length": 5886,
          "cdna_start": 5630,
          "cdna_end": null,
          "cdna_length": 6498,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920713.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 33,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5509A>G",
          "hgvs_p": "p.Ile1837Val",
          "transcript": "ENST00000920716.1",
          "protein_id": "ENSP00000590775.1",
          "transcript_support_level": null,
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          "cds_start": 5509,
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        },
        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
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          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5479A>G",
          "hgvs_p": "p.Ile1827Val",
          "transcript": "ENST00000950344.1",
          "protein_id": "ENSP00000620403.1",
          "transcript_support_level": null,
          "aa_start": 1827,
          "aa_end": null,
          "aa_length": 1951,
          "cds_start": 5479,
          "cds_end": null,
          "cds_length": 5856,
          "cdna_start": 5608,
          "cdna_end": null,
          "cdna_length": 6465,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000950344.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.142A>G",
          "hgvs_p": "p.Ile48Val",
          "transcript": "ENST00000425467.5",
          "protein_id": "ENSP00000408222.1",
          "transcript_support_level": 3,
          "aa_start": 48,
          "aa_end": null,
          "aa_length": 115,
          "cds_start": 142,
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          "cdna_start": 142,
          "cdna_end": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000425467.5"
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5836A>G",
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          "transcript": "XM_006712034.3",
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        {
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          "intron_rank": null,
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          "gene_symbol": "HEATR5B",
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          "hgvs_c": "c.5803A>G",
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          "transcript": "XM_006712035.5",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "I",
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          "exon_count": 36,
          "intron_rank": null,
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          "gene_symbol": "HEATR5B",
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          "hgvs_c": "c.5800A>G",
          "hgvs_p": "p.Ile1934Val",
          "transcript": "XM_047444810.1",
          "protein_id": "XP_047300766.1",
          "transcript_support_level": null,
          "aa_start": 1934,
          "aa_end": null,
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          "cds_start": 5800,
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          "cds_length": 6177,
          "cdna_start": 5926,
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          "cdna_length": 6898,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047444810.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "HEATR5B",
          "gene_hgnc_id": 29273,
          "hgvs_c": "c.5572A>G",
          "hgvs_p": "p.Ile1858Val",
          "transcript": "XM_017004378.2",
          "protein_id": "XP_016859867.1",
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      "gene_symbol": "HEATR5B",
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      "computational_score_selected": 0.009647399187088013,
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      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.71,
      "bayesdelnoaf_prediction": "Benign",
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      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_classification": "Likely_benign",
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      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.