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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-38071277-TTCTGCCTGCACTC-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=38071277&ref=TTCTGCCTGCACTC&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 38071277,
"ref": "TTCTGCCTGCACTC",
"alt": "T",
"effect": "frameshift_variant",
"transcript": "NM_000104.4",
"consequences": [
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "NM_000104.4",
"protein_id": "NP_000095.2",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1449,
"cdna_end": null,
"cdna_length": 5218,
"mane_select": "ENST00000610745.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000104.4"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000610745.5",
"protein_id": "ENSP00000478561.1",
"transcript_support_level": 1,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1449,
"cdna_end": null,
"cdna_length": 5218,
"mane_select": "NM_000104.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000610745.5"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000490576.2",
"protein_id": "ENSP00000478839.2",
"transcript_support_level": 4,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1252,
"cdna_end": null,
"cdna_length": 5021,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000490576.2"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000614273.1",
"protein_id": "ENSP00000483678.1",
"transcript_support_level": 5,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1378,
"cdna_end": null,
"cdna_length": 2174,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000614273.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000714520.1",
"protein_id": "ENSP00000519767.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1479,
"cdna_end": null,
"cdna_length": 5248,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000714520.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000860003.1",
"protein_id": "ENSP00000530062.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 2986,
"cdna_end": null,
"cdna_length": 6653,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860003.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000948951.1",
"protein_id": "ENSP00000619010.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1355,
"cdna_end": null,
"cdna_length": 2704,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948951.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000948952.1",
"protein_id": "ENSP00000619011.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1186,
"cdna_end": null,
"cdna_length": 4174,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948952.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000948953.1",
"protein_id": "ENSP00000619012.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1519,
"cdna_end": null,
"cdna_length": 4507,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948953.1"
},
{
"aa_ref": "RVQAE",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs",
"transcript": "ENST00000948954.1",
"protein_id": "ENSP00000619013.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 543,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1632,
"cdna_start": 1504,
"cdna_end": null,
"cdna_length": 2851,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948954.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "c.-50_-38delGAGTGCAGGCAGA",
"hgvs_p": null,
"transcript": "ENST00000494864.1",
"protein_id": "ENSP00000479876.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 172,
"cds_start": null,
"cds_end": null,
"cds_length": 519,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1479,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000494864.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "n.442_454delGAGTGCAGGCAGA",
"hgvs_p": null,
"transcript": "ENST00000492443.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 745,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000492443.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"hgvs_c": "n.459_471delGAGTGCAGGCAGA",
"hgvs_p": null,
"transcript": "ENST00000613082.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 573,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000613082.1"
}
],
"gene_symbol": "CYP1B1",
"gene_hgnc_id": 2597,
"dbsnp": "rs72549380",
"frequency_reference_population": 0.00020271477,
"hom_count_reference_population": 0,
"allele_count_reference_population": 327,
"gnomad_exomes_af": 0.000200582,
"gnomad_genomes_af": 0.000223164,
"gnomad_exomes_ac": 293,
"gnomad_genomes_ac": 34,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 9.864,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 16,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 16,
"benign_score": 0,
"pathogenic_score": 16,
"criteria": [
"PVS1",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "NM_000104.4",
"gene_symbol": "CYP1B1",
"hgnc_id": 2597,
"effects": [
"frameshift_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.1064_1076delGAGTGCAGGCAGA",
"hgvs_p": "p.Arg355fs"
}
],
"clinvar_disease": "Anterior segment dysgenesis 6,CYP1B1-related disorder,Congenital glaucoma,Glaucoma 3A,Primary congenital glaucoma,not provided",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:13",
"phenotype_combined": "not provided|Congenital glaucoma|Anterior segment dysgenesis 6|Glaucoma 3A|CYP1B1-related disorder|Primary congenital glaucoma|Anterior segment dysgenesis 6;Glaucoma 3A",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}