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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-38798401-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=38798401&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 38798401,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_198963.3",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His",
"transcript": "NM_198963.3",
"protein_id": "NP_945314.1",
"transcript_support_level": null,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1386,
"cds_start": 4059,
"cds_end": null,
"cds_length": 4161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000457308.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_198963.3"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His",
"transcript": "ENST00000457308.6",
"protein_id": "ENSP00000405111.2",
"transcript_support_level": 1,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1386,
"cds_start": 4059,
"cds_end": null,
"cds_length": 4161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_198963.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000457308.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "n.*2357G>C",
"hgvs_p": null,
"transcript": "ENST00000620517.4",
"protein_id": "ENSP00000482275.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000620517.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "n.5086G>C",
"hgvs_p": null,
"transcript": "ENST00000622155.4",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000622155.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "n.*2357G>C",
"hgvs_p": null,
"transcript": "ENST00000620517.4",
"protein_id": "ENSP00000482275.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000620517.4"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His",
"transcript": "ENST00000896810.1",
"protein_id": "ENSP00000566869.1",
"transcript_support_level": null,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1386,
"cds_start": 4059,
"cds_end": null,
"cds_length": 4161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000896810.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4056G>C",
"hgvs_p": "p.Gln1352His",
"transcript": "ENST00000934862.1",
"protein_id": "ENSP00000604921.1",
"transcript_support_level": null,
"aa_start": 1352,
"aa_end": null,
"aa_length": 1385,
"cds_start": 4056,
"cds_end": null,
"cds_length": 4158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934862.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4050G>C",
"hgvs_p": "p.Gln1350His",
"transcript": "ENST00000896808.1",
"protein_id": "ENSP00000566867.1",
"transcript_support_level": null,
"aa_start": 1350,
"aa_end": null,
"aa_length": 1383,
"cds_start": 4050,
"cds_end": null,
"cds_length": 4152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000896808.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4023G>C",
"hgvs_p": "p.Gln1341His",
"transcript": "ENST00000896807.1",
"protein_id": "ENSP00000566866.1",
"transcript_support_level": null,
"aa_start": 1341,
"aa_end": null,
"aa_length": 1374,
"cds_start": 4023,
"cds_end": null,
"cds_length": 4125,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000896807.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3975G>C",
"hgvs_p": "p.Gln1325His",
"transcript": "ENST00000896809.1",
"protein_id": "ENSP00000566868.1",
"transcript_support_level": null,
"aa_start": 1325,
"aa_end": null,
"aa_length": 1358,
"cds_start": 3975,
"cds_end": null,
"cds_length": 4077,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000896809.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3930G>C",
"hgvs_p": "p.Gln1310His",
"transcript": "ENST00000934864.1",
"protein_id": "ENSP00000604923.1",
"transcript_support_level": null,
"aa_start": 1310,
"aa_end": null,
"aa_length": 1343,
"cds_start": 3930,
"cds_end": null,
"cds_length": 4032,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934864.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3924G>C",
"hgvs_p": "p.Gln1308His",
"transcript": "ENST00000934861.1",
"protein_id": "ENSP00000604920.1",
"transcript_support_level": null,
"aa_start": 1308,
"aa_end": null,
"aa_length": 1341,
"cds_start": 3924,
"cds_end": null,
"cds_length": 4026,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934861.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3888G>C",
"hgvs_p": "p.Gln1296His",
"transcript": "ENST00000934863.1",
"protein_id": "ENSP00000604922.1",
"transcript_support_level": null,
"aa_start": 1296,
"aa_end": null,
"aa_length": 1329,
"cds_start": 3888,
"cds_end": null,
"cds_length": 3990,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934863.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3753G>C",
"hgvs_p": "p.Gln1251His",
"transcript": "NM_001329963.1",
"protein_id": "NP_001316892.1",
"transcript_support_level": null,
"aa_start": 1251,
"aa_end": null,
"aa_length": 1284,
"cds_start": 3753,
"cds_end": null,
"cds_length": 3855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001329963.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3723G>C",
"hgvs_p": "p.Gln1241His",
"transcript": "ENST00000934865.1",
"protein_id": "ENSP00000604924.1",
"transcript_support_level": null,
"aa_start": 1241,
"aa_end": null,
"aa_length": 1274,
"cds_start": 3723,
"cds_end": null,
"cds_length": 3825,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934865.1"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.1893G>C",
"hgvs_p": "p.Gln631His",
"transcript": "ENST00000452978.5",
"protein_id": "ENSP00000397841.1",
"transcript_support_level": 5,
"aa_start": 631,
"aa_end": null,
"aa_length": 664,
"cds_start": 1893,
"cds_end": null,
"cds_length": 1995,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000452978.5"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His",
"transcript": "XM_011533154.3",
"protein_id": "XP_011531456.1",
"transcript_support_level": null,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1386,
"cds_start": 4059,
"cds_end": null,
"cds_length": 4161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011533154.3"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His",
"transcript": "XM_011533155.3",
"protein_id": "XP_011531457.1",
"transcript_support_level": null,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1386,
"cds_start": 4059,
"cds_end": null,
"cds_length": 4161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011533155.3"
},
{
"aa_ref": "Q",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.3753G>C",
"hgvs_p": "p.Gln1251His",
"transcript": "XM_024453215.1",
"protein_id": "XP_024308983.1",
"transcript_support_level": null,
"aa_start": 1251,
"aa_end": null,
"aa_length": 1284,
"cds_start": 3753,
"cds_end": null,
"cds_length": 3855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024453215.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "c.*42G>C",
"hgvs_p": null,
"transcript": "XM_011533156.4",
"protein_id": "XP_011531458.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1342,
"cds_start": null,
"cds_end": null,
"cds_length": 4029,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011533156.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"hgvs_c": "n.351G>C",
"hgvs_p": null,
"transcript": "ENST00000477981.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000477981.1"
}
],
"gene_symbol": "DHX57",
"gene_hgnc_id": 20086,
"dbsnp": "rs1436642790",
"frequency_reference_population": 0.0000027365359,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 0.00000273654,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 4,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.3828999102115631,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.029999999329447746,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.126,
"revel_prediction": "Benign",
"alphamissense_score": 0.2384,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.34,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.563,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.03,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "NM_198963.3",
"gene_symbol": "DHX57",
"hgnc_id": 20086,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.4059G>C",
"hgvs_p": "p.Gln1353His"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}