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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-70663664-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=70663664&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 5,
"criteria": [
"BP4",
"BS2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "ADD2",
"hgnc_id": 244,
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -5,
"transcript": "NM_001617.4",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4,BS2",
"acmg_score": -5,
"allele_count_reference_population": 7,
"alphamissense_prediction": null,
"alphamissense_score": 0.1657,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.25,
"chr": "2",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.30401596426963806,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9290,
"cdna_start": 2410,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001617.4",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000264436.9",
"protein_coding": true,
"protein_id": "NP_001608.1",
"strand": false,
"transcript": "NM_001617.4",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 9290,
"cdna_start": 2410,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000264436.9",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001617.4",
"protein_coding": true,
"protein_id": "ENSP00000264436.3",
"strand": false,
"transcript": "ENST00000264436.9",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3741,
"cdna_start": 2207,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000407644.6",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000384677.2",
"strand": false,
"transcript": "ENST00000407644.6",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 643,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2654,
"cdna_start": null,
"cds_end": null,
"cds_length": 1932,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000355733.7",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.*96G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000347972.3",
"strand": false,
"transcript": "ENST00000355733.7",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 756,
"aa_ref": "V",
"aa_start": 678,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2726,
"cdna_start": 2481,
"cds_end": null,
"cds_length": 2271,
"cds_start": 2032,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000912692.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.2032G>T",
"hgvs_p": "p.Val678Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582751.1",
"strand": false,
"transcript": "ENST00000912692.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 743,
"aa_ref": "V",
"aa_start": 665,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4990,
"cdna_start": 2522,
"cds_end": null,
"cds_length": 2232,
"cds_start": 1993,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000912688.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1993G>T",
"hgvs_p": "p.Val665Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582747.1",
"strand": false,
"transcript": "ENST00000912688.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9087,
"cdna_start": 2207,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001185054.2",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001171983.1",
"strand": false,
"transcript": "NM_001185054.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3691,
"cdna_start": 2157,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000900356.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000570415.1",
"strand": false,
"transcript": "ENST00000900356.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4658,
"cdna_start": 2196,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000912689.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582748.1",
"strand": false,
"transcript": "ENST00000912689.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3957,
"cdna_start": 2423,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000912690.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582749.1",
"strand": false,
"transcript": "ENST00000912690.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 725,
"aa_ref": "V",
"aa_start": 647,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9314,
"cdna_start": 2440,
"cds_end": null,
"cds_length": 2178,
"cds_start": 1939,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000912686.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1939G>T",
"hgvs_p": "p.Val647Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582745.1",
"strand": false,
"transcript": "ENST00000912686.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 667,
"aa_ref": "V",
"aa_start": 589,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4819,
"cdna_start": 2356,
"cds_end": null,
"cds_length": 2004,
"cds_start": 1765,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000912687.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1765G>T",
"hgvs_p": "p.Val589Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582746.1",
"strand": false,
"transcript": "ENST00000912687.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 574,
"aa_ref": "V",
"aa_start": 496,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3511,
"cdna_start": 1978,
"cds_end": null,
"cds_length": 1725,
"cds_start": 1486,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000912691.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1486G>T",
"hgvs_p": "p.Val496Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000582750.1",
"strand": false,
"transcript": "ENST00000912691.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 726,
"aa_ref": "V",
"aa_start": 648,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9042,
"cdna_start": 2162,
"cds_end": null,
"cds_length": 2181,
"cds_start": 1942,
"consequences": [
"missense_variant"
],
"exon_count": 16,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "XM_011532502.3",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.1942G>T",
"hgvs_p": "p.Val648Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_011530804.1",
"strand": false,
"transcript": "XM_011532502.3",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 643,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9376,
"cdna_start": null,
"cds_end": null,
"cds_length": 1932,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 17,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_017488.4",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "c.*96G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_059522.1",
"strand": false,
"transcript": "NM_017488.4",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 3745,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 21,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000403045.6",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "n.1942G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000384303.2",
"strand": false,
"transcript": "ENST00000403045.6",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 475,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 3,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000481675.1",
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"hgvs_c": "n.309G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000481675.1",
"transcript_support_level": 4
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs1675629105",
"effect": "missense_variant",
"frequency_reference_population": 0.0000043370133,
"gene_hgnc_id": 244,
"gene_symbol": "ADD2",
"gnomad_exomes_ac": 6,
"gnomad_exomes_af": 0.0000041043,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": 1,
"gnomad_genomes_af": 0.00000657315,
"gnomad_genomes_homalt": 0,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Uncertain_significance",
"phylop100way_score": 4.698,
"pos": 70663664,
"ref": "C",
"revel_prediction": "Benign",
"revel_score": 0.159,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0,
"transcript": "NM_001617.4"
}
]
}