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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-73913565-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=73913565&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 73913565,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001615.4",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "NM_001615.4",
          "protein_id": "NP_001606.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000345517.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001615.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000345517.8",
          "protein_id": "ENSP00000295137.3",
          "transcript_support_level": 1,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001615.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000345517.8"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.619C>T",
          "hgvs_p": "p.Arg207Cys",
          "transcript": "ENST00000880128.1",
          "protein_id": "ENSP00000550187.1",
          "transcript_support_level": null,
          "aa_start": 207,
          "aa_end": null,
          "aa_length": 405,
          "cds_start": 619,
          "cds_end": null,
          "cds_length": 1218,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880128.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.610C>T",
          "hgvs_p": "p.Arg204Cys",
          "transcript": "ENST00000958365.1",
          "protein_id": "ENSP00000628424.1",
          "transcript_support_level": null,
          "aa_start": 204,
          "aa_end": null,
          "aa_length": 402,
          "cds_start": 610,
          "cds_end": null,
          "cds_length": 1209,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958365.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000409624.1",
          "protein_id": "ENSP00000386857.1",
          "transcript_support_level": 2,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000409624.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000880130.1",
          "protein_id": "ENSP00000550189.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880130.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000880131.1",
          "protein_id": "ENSP00000550190.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880131.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000880132.1",
          "protein_id": "ENSP00000550191.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000880132.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958362.1",
          "protein_id": "ENSP00000628421.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958362.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958366.1",
          "protein_id": "ENSP00000628425.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958366.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958368.1",
          "protein_id": "ENSP00000628427.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958368.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958370.1",
          "protein_id": "ENSP00000628429.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958370.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958371.1",
          "protein_id": "ENSP00000628430.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958371.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958372.1",
          "protein_id": "ENSP00000628431.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000958372.1"
        },
        {
          "aa_ref": "R",
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
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          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958373.1",
          "protein_id": "ENSP00000628432.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
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          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000958373.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys",
          "transcript": "ENST00000958367.1",
          "protein_id": "ENSP00000628426.1",
          "transcript_support_level": null,
          "aa_start": 178,
          "aa_end": null,
          "aa_length": 375,
          "cds_start": 532,
          "cds_end": null,
          "cds_length": 1128,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000958367.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.490C>T",
          "hgvs_p": "p.Arg164Cys",
          "transcript": "ENST00000958369.1",
          "protein_id": "ENSP00000628428.1",
          "transcript_support_level": null,
          "aa_start": 164,
          "aa_end": null,
          "aa_length": 362,
          "cds_start": 490,
          "cds_end": null,
          "cds_length": 1089,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
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          ],
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          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.436C>T",
          "hgvs_p": "p.Arg146Cys",
          "transcript": "ENST00000880129.1",
          "protein_id": "ENSP00000550188.1",
          "transcript_support_level": null,
          "aa_start": 146,
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          "aa_length": 344,
          "cds_start": 436,
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          "cds_length": 1035,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000880129.1"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.421C>T",
          "hgvs_p": "p.Arg141Cys",
          "transcript": "ENST00000958364.1",
          "protein_id": "ENSP00000628423.1",
          "transcript_support_level": null,
          "aa_start": 141,
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          "aa_length": 339,
          "cds_start": 421,
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          "cds_length": 1020,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000958364.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTG2",
          "gene_hgnc_id": 145,
          "hgvs_c": "c.403C>T",
          "hgvs_p": "p.Arg135Cys",
          "transcript": "NM_001199893.2",
          "protein_id": "NP_001186822.1",
          "transcript_support_level": null,
          "aa_start": 135,
          "aa_end": null,
          "aa_length": 333,
          "cds_start": 403,
          "cds_end": null,
          "cds_length": 1002,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001199893.2"
        },
        {
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        {
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        },
        {
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          "consequences": [
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          "gene_symbol": "ACTG2",
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          "hgvs_c": "n.*597C>T",
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          "transcript": "ENST00000438902.6",
          "protein_id": "ENSP00000410706.2",
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          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000438902.6"
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      ],
      "gene_symbol": "ACTG2",
      "gene_hgnc_id": 145,
      "dbsnp": "rs78001248",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.9660519957542419,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.98,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.9949,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.54,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 7.905,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 17,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PM2,PM5,PP2,PP3_Strong,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 17,
          "benign_score": 0,
          "pathogenic_score": 17,
          "criteria": [
            "PM2",
            "PM5",
            "PP2",
            "PP3_Strong",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_001615.4",
          "gene_symbol": "ACTG2",
          "hgnc_id": 145,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.532C>T",
          "hgvs_p": "p.Arg178Cys"
        }
      ],
      "clinvar_disease": "ACTG2-related disorder,Megacystis-microcolon-intestinal hypoperistalsis syndrome 5,Visceral myopathy 1,not provided",
      "clinvar_classification": "Pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:6 O:1",
      "phenotype_combined": "Visceral myopathy 1|not provided|ACTG2-related disorder|Megacystis-microcolon-intestinal hypoperistalsis syndrome 5",
      "pathogenicity_classification_combined": "Pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}