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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 2-8808940-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=8808940&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "2",
      "pos": 8808940,
      "ref": "T",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "NM_001348729.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.505-2571A>G",
          "hgvs_p": null,
          "transcript": "NM_020738.4",
          "protein_id": "NP_065789.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1771,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000256707.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_020738.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.505-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000256707.8",
          "protein_id": "ENSP00000256707.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1771,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_020738.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000256707.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000319688.5",
          "protein_id": "ENSP00000319947.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1031,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3096,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000319688.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "n.*565-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000488729.5",
          "protein_id": "ENSP00000417390.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000488729.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "NM_001348729.2",
          "protein_id": "NP_001335658.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1772,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5319,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348729.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000959946.1",
          "protein_id": "ENSP00000630005.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1772,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5319,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000959946.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.505-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000959948.1",
          "protein_id": "ENSP00000630007.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1771,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5316,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000959948.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000691030.1",
          "protein_id": "ENSP00000510148.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1764,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5295,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000691030.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "NM_001348731.2",
          "protein_id": "NP_001335660.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1753,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 5262,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001348731.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000882910.1",
          "protein_id": "ENSP00000552969.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1753,
          "cds_start": null,
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          "cds_length": 5262,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
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          "consequences": [
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          "intron_rank": 7,
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          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
          "hgvs_p": null,
          "transcript": "ENST00000933256.1",
          "protein_id": "ENSP00000603315.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1753,
          "cds_start": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
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          "consequences": [
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          "intron_rank": 6,
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          "gene_symbol": "KIDINS220",
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          "transcript": "NM_001348732.2",
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          "cdna_start": null,
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        {
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          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
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          "transcript": "ENST00000473731.5",
          "protein_id": "ENSP00000418974.1",
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        {
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          "gene_symbol": "KIDINS220",
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          "hgvs_p": null,
          "transcript": "ENST00000882909.1",
          "protein_id": "ENSP00000552968.1",
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        {
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          "intron_rank": 6,
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          "gene_symbol": "KIDINS220",
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          "transcript": "ENST00000959949.1",
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        {
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          "intron_rank": 6,
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          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.508-2571A>G",
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          "transcript": "NM_001348734.2",
          "protein_id": "NP_001335663.1",
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        {
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          "consequences": [
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          ],
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          "exon_count": 29,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "KIDINS220",
          "gene_hgnc_id": 29508,
          "hgvs_c": "c.379-2571A>G",
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          "transcript": "NM_001348736.2",
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        {
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      "acmg_classification": "Benign",
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      "acmg_by_gene": [
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          "verdict": "Benign",
          "transcript": "NM_001348729.2",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}