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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-88182739-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=88182739&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 88182739,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000674334.2",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "NM_018271.5",
"protein_id": "NP_060741.3",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 966,
"cdna_end": null,
"cdna_length": 2082,
"mane_select": "ENST00000674334.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "ENST00000674334.2",
"protein_id": "ENSP00000501453.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 966,
"cdna_end": null,
"cdna_length": 2082,
"mane_select": "NM_018271.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "ENST00000324166.7",
"protein_id": "ENSP00000327323.5",
"transcript_support_level": 1,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 855,
"cdna_end": null,
"cdna_length": 1980,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "ENST00000343544.8",
"protein_id": "ENSP00000339563.4",
"transcript_support_level": 1,
"aa_start": 281,
"aa_end": null,
"aa_length": 405,
"cds_start": 843,
"cds_end": null,
"cds_length": 1218,
"cdna_start": 914,
"cdna_end": null,
"cdna_length": 2052,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "NM_001244676.2",
"protein_id": "NP_001231605.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 405,
"cds_start": 843,
"cds_end": null,
"cds_length": 1218,
"cdna_start": 966,
"cdna_end": null,
"cdna_length": 2104,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "NM_001384383.1",
"protein_id": "NP_001371312.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 384,
"cds_start": 843,
"cds_end": null,
"cds_length": 1155,
"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4612,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "ENST00000496844.6",
"protein_id": "ENSP00000501447.1",
"transcript_support_level": 5,
"aa_start": 281,
"aa_end": null,
"aa_length": 384,
"cds_start": 843,
"cds_end": null,
"cds_length": 1155,
"cdna_start": 883,
"cdna_end": null,
"cdna_length": 1678,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.369G>A",
"hgvs_p": "p.Leu123Leu",
"transcript": "NM_001244678.2",
"protein_id": "NP_001231607.1",
"transcript_support_level": null,
"aa_start": 123,
"aa_end": null,
"aa_length": 226,
"cds_start": 369,
"cds_end": null,
"cds_length": 681,
"cdna_start": 536,
"cdna_end": null,
"cdna_length": 1500,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.369G>A",
"hgvs_p": "p.Leu123Leu",
"transcript": "NM_001384382.1",
"protein_id": "NP_001371311.1",
"transcript_support_level": null,
"aa_start": 123,
"aa_end": null,
"aa_length": 226,
"cds_start": 369,
"cds_end": null,
"cds_length": 681,
"cdna_start": 731,
"cdna_end": null,
"cdna_length": 1695,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.369G>A",
"hgvs_p": "p.Leu123Leu",
"transcript": "ENST00000377254.7",
"protein_id": "ENSP00000366464.4",
"transcript_support_level": 2,
"aa_start": 123,
"aa_end": null,
"aa_length": 226,
"cds_start": 369,
"cds_end": null,
"cds_length": 681,
"cdna_start": 587,
"cdna_end": null,
"cdna_length": 1560,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_005264401.6",
"protein_id": "XP_005264458.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 1520,
"cdna_end": null,
"cdna_length": 2636,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_024452975.2",
"protein_id": "XP_024308743.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 952,
"cdna_end": null,
"cdna_length": 2068,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_047444896.1",
"protein_id": "XP_047300852.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 484,
"cds_start": 843,
"cds_end": null,
"cds_length": 1455,
"cdna_start": 871,
"cdna_end": null,
"cdna_length": 1987,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_011532953.3",
"protein_id": "XP_011531255.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 431,
"cds_start": 843,
"cds_end": null,
"cds_length": 1296,
"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4199,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_006712041.4",
"protein_id": "XP_006712104.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 423,
"cds_start": 843,
"cds_end": null,
"cds_length": 1272,
"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4729,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_005264402.4",
"protein_id": "XP_005264459.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 421,
"cds_start": 843,
"cds_end": null,
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"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4162,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_006712042.4",
"protein_id": "XP_006712105.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 420,
"cds_start": 843,
"cds_end": null,
"cds_length": 1263,
"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4159,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.648G>A",
"hgvs_p": "p.Leu216Leu",
"transcript": "XM_011532954.3",
"protein_id": "XP_011531256.1",
"transcript_support_level": null,
"aa_start": 216,
"aa_end": null,
"aa_length": 419,
"cds_start": 648,
"cds_end": null,
"cds_length": 1260,
"cdna_start": 3453,
"cdna_end": null,
"cdna_length": 4569,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_006712043.3",
"protein_id": "XP_006712106.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 405,
"cds_start": 843,
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"cdna_start": 3648,
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"cdna_length": 4146,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_047444898.1",
"protein_id": "XP_047300854.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 384,
"cds_start": 843,
"cds_end": null,
"cds_length": 1155,
"cdna_start": 966,
"cdna_end": null,
"cdna_length": 1930,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_047444899.1",
"protein_id": "XP_047300855.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 377,
"cds_start": 843,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 3648,
"cdna_end": null,
"cdna_length": 4079,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
"gene_hgnc_id": 25602,
"hgvs_c": "c.843G>A",
"hgvs_p": "p.Leu281Leu",
"transcript": "XM_047444900.1",
"protein_id": "XP_047300856.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 370,
"cds_start": 843,
"cds_end": null,
"cds_length": 1113,
"cdna_start": 966,
"cdna_end": null,
"cdna_length": 1895,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "THNSL2",
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}
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}