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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-99035335-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=99035335&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 99035335,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_025244.4",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "NM_025244.4",
"protein_id": "NP_079520.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000393483.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_025244.4"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000393483.8",
"protein_id": "ENSP00000377123.3",
"transcript_support_level": 1,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_025244.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393483.8"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000355053.8",
"protein_id": "ENSP00000347161.4",
"transcript_support_level": 1,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000355053.8"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000410001.5",
"protein_id": "ENSP00000386956.1",
"transcript_support_level": 1,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000410001.5"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1782C>T",
"hgvs_p": "p.Ser594Ser",
"transcript": "ENST00000674128.1",
"protein_id": "ENSP00000501312.1",
"transcript_support_level": null,
"aa_start": 594,
"aa_end": null,
"aa_length": 789,
"cds_start": 1782,
"cds_end": null,
"cds_length": 2370,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674128.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1602C>T",
"hgvs_p": "p.Ser534Ser",
"transcript": "ENST00000970981.1",
"protein_id": "ENSP00000641040.1",
"transcript_support_level": null,
"aa_start": 534,
"aa_end": null,
"aa_length": 729,
"cds_start": 1602,
"cds_end": null,
"cds_length": 2190,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970981.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1521C>T",
"hgvs_p": "p.Ser507Ser",
"transcript": "ENST00000851776.1",
"protein_id": "ENSP00000521835.1",
"transcript_support_level": null,
"aa_start": 507,
"aa_end": null,
"aa_length": 702,
"cds_start": 1521,
"cds_end": null,
"cds_length": 2109,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851776.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1521C>T",
"hgvs_p": "p.Ser507Ser",
"transcript": "ENST00000970978.1",
"protein_id": "ENSP00000641037.1",
"transcript_support_level": null,
"aa_start": 507,
"aa_end": null,
"aa_length": 702,
"cds_start": 1521,
"cds_end": null,
"cds_length": 2109,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970978.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "NM_001349012.1",
"protein_id": "NP_001335941.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349012.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "NM_182911.4",
"protein_id": "NP_878915.2",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_182911.4"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851768.1",
"protein_id": "ENSP00000521827.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851768.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851770.1",
"protein_id": "ENSP00000521829.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851770.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851771.1",
"protein_id": "ENSP00000521830.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851771.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851772.1",
"protein_id": "ENSP00000521831.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851772.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851773.1",
"protein_id": "ENSP00000521832.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851773.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851775.1",
"protein_id": "ENSP00000521834.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851775.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851777.1",
"protein_id": "ENSP00000521836.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851777.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851778.1",
"protein_id": "ENSP00000521837.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851778.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000851780.1",
"protein_id": "ENSP00000521839.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851780.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000917867.1",
"protein_id": "ENSP00000587926.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000917867.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000970975.1",
"protein_id": "ENSP00000641034.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970975.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TSGA10",
"gene_hgnc_id": 14927,
"hgvs_c": "c.1509C>T",
"hgvs_p": "p.Ser503Ser",
"transcript": "ENST00000970977.1",
"protein_id": "ENSP00000641036.1",
"transcript_support_level": null,
"aa_start": 503,
"aa_end": null,
"aa_length": 698,
"cds_start": 1509,
"cds_end": null,
"cds_length": 2097,
"cdna_start": null,
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{
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"BS2"
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}