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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 2-99403025-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=2&pos=99403025&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "2",
"pos": 99403025,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001321454.2",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3248C>G",
"hgvs_p": "p.Pro1083Arg",
"transcript": "NM_016316.4",
"protein_id": "NP_057400.1",
"transcript_support_level": null,
"aa_start": 1083,
"aa_end": null,
"aa_length": 1251,
"cds_start": 3248,
"cds_end": null,
"cds_length": 3756,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000258428.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016316.4"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3248C>G",
"hgvs_p": "p.Pro1083Arg",
"transcript": "ENST00000258428.8",
"protein_id": "ENSP00000258428.3",
"transcript_support_level": 1,
"aa_start": 1083,
"aa_end": null,
"aa_length": 1251,
"cds_start": 3248,
"cds_end": null,
"cds_length": 3756,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_016316.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000258428.8"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3245C>G",
"hgvs_p": "p.Pro1082Arg",
"transcript": "ENST00000393445.7",
"protein_id": "ENSP00000377091.3",
"transcript_support_level": 1,
"aa_start": 1082,
"aa_end": null,
"aa_length": 1250,
"cds_start": 3245,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393445.7"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3356C>G",
"hgvs_p": "p.Pro1119Arg",
"transcript": "NM_001321454.2",
"protein_id": "NP_001308383.1",
"transcript_support_level": null,
"aa_start": 1119,
"aa_end": null,
"aa_length": 1287,
"cds_start": 3356,
"cds_end": null,
"cds_length": 3864,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321454.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3356C>G",
"hgvs_p": "p.Pro1119Arg",
"transcript": "ENST00000879664.1",
"protein_id": "ENSP00000549723.1",
"transcript_support_level": null,
"aa_start": 1119,
"aa_end": null,
"aa_length": 1287,
"cds_start": 3356,
"cds_end": null,
"cds_length": 3864,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000879664.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3353C>G",
"hgvs_p": "p.Pro1118Arg",
"transcript": "ENST00000879665.1",
"protein_id": "ENSP00000549724.1",
"transcript_support_level": null,
"aa_start": 1118,
"aa_end": null,
"aa_length": 1286,
"cds_start": 3353,
"cds_end": null,
"cds_length": 3861,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000879665.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3248C>G",
"hgvs_p": "p.Pro1083Arg",
"transcript": "ENST00000879663.1",
"protein_id": "ENSP00000549722.1",
"transcript_support_level": null,
"aa_start": 1083,
"aa_end": null,
"aa_length": 1251,
"cds_start": 3248,
"cds_end": null,
"cds_length": 3756,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000879663.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3248C>G",
"hgvs_p": "p.Pro1083Arg",
"transcript": "ENST00000920279.1",
"protein_id": "ENSP00000590338.1",
"transcript_support_level": null,
"aa_start": 1083,
"aa_end": null,
"aa_length": 1251,
"cds_start": 3248,
"cds_end": null,
"cds_length": 3756,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920279.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3245C>G",
"hgvs_p": "p.Pro1082Arg",
"transcript": "NM_001037872.3",
"protein_id": "NP_001032961.1",
"transcript_support_level": null,
"aa_start": 1082,
"aa_end": null,
"aa_length": 1250,
"cds_start": 3245,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001037872.3"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3245C>G",
"hgvs_p": "p.Pro1082Arg",
"transcript": "ENST00000920275.1",
"protein_id": "ENSP00000590334.1",
"transcript_support_level": null,
"aa_start": 1082,
"aa_end": null,
"aa_length": 1250,
"cds_start": 3245,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920275.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3245C>G",
"hgvs_p": "p.Pro1082Arg",
"transcript": "ENST00000949065.1",
"protein_id": "ENSP00000619124.1",
"transcript_support_level": null,
"aa_start": 1082,
"aa_end": null,
"aa_length": 1250,
"cds_start": 3245,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949065.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3215C>G",
"hgvs_p": "p.Pro1072Arg",
"transcript": "ENST00000920281.1",
"protein_id": "ENSP00000590340.1",
"transcript_support_level": null,
"aa_start": 1072,
"aa_end": null,
"aa_length": 1240,
"cds_start": 3215,
"cds_end": null,
"cds_length": 3723,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920281.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3137C>G",
"hgvs_p": "p.Pro1046Arg",
"transcript": "ENST00000920280.1",
"protein_id": "ENSP00000590339.1",
"transcript_support_level": null,
"aa_start": 1046,
"aa_end": null,
"aa_length": 1214,
"cds_start": 3137,
"cds_end": null,
"cds_length": 3645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920280.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3092C>G",
"hgvs_p": "p.Pro1031Arg",
"transcript": "ENST00000879666.1",
"protein_id": "ENSP00000549725.1",
"transcript_support_level": null,
"aa_start": 1031,
"aa_end": null,
"aa_length": 1199,
"cds_start": 3092,
"cds_end": null,
"cds_length": 3600,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000879666.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3035C>G",
"hgvs_p": "p.Pro1012Arg",
"transcript": "NM_001321455.2",
"protein_id": "NP_001308384.1",
"transcript_support_level": null,
"aa_start": 1012,
"aa_end": null,
"aa_length": 1180,
"cds_start": 3035,
"cds_end": null,
"cds_length": 3543,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321455.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.3020C>G",
"hgvs_p": "p.Pro1007Arg",
"transcript": "ENST00000949066.1",
"protein_id": "ENSP00000619125.1",
"transcript_support_level": null,
"aa_start": 1007,
"aa_end": null,
"aa_length": 1175,
"cds_start": 3020,
"cds_end": null,
"cds_length": 3528,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949066.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.2867C>G",
"hgvs_p": "p.Pro956Arg",
"transcript": "ENST00000920278.1",
"protein_id": "ENSP00000590337.1",
"transcript_support_level": null,
"aa_start": 956,
"aa_end": null,
"aa_length": 1124,
"cds_start": 2867,
"cds_end": null,
"cds_length": 3375,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920278.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.2213C>G",
"hgvs_p": "p.Pro738Arg",
"transcript": "ENST00000920276.1",
"protein_id": "ENSP00000590335.1",
"transcript_support_level": null,
"aa_start": 738,
"aa_end": null,
"aa_length": 906,
"cds_start": 2213,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920276.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.2213C>G",
"hgvs_p": "p.Pro738Arg",
"transcript": "ENST00000949067.1",
"protein_id": "ENSP00000619126.1",
"transcript_support_level": null,
"aa_start": 738,
"aa_end": null,
"aa_length": 906,
"cds_start": 2213,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000949067.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.2105C>G",
"hgvs_p": "p.Pro702Arg",
"transcript": "ENST00000920277.1",
"protein_id": "ENSP00000590336.1",
"transcript_support_level": null,
"aa_start": 702,
"aa_end": null,
"aa_length": 870,
"cds_start": 2105,
"cds_end": null,
"cds_length": 2613,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920277.1"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.1778C>G",
"hgvs_p": "p.Pro593Arg",
"transcript": "NM_001321458.2",
"protein_id": "NP_001308387.1",
"transcript_support_level": null,
"aa_start": 593,
"aa_end": null,
"aa_length": 761,
"cds_start": 1778,
"cds_end": null,
"cds_length": 2286,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321458.2"
},
{
"aa_ref": "P",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "REV1",
"gene_hgnc_id": 14060,
"hgvs_c": "c.1679C>G",
"hgvs_p": "p.Pro560Arg",
"transcript": "NM_001321459.2",
"protein_id": "NP_001308388.1",
"transcript_support_level": null,
"aa_start": 560,
"aa_end": null,
"aa_length": 728,
"cds_start": 1679,
"cds_end": null,
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{
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"downstream_gene_variant"
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"biotype": "pseudogene",
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{
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"protein_coding": false,
"strand": true,
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"downstream_gene_variant"
],
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"exon_count": 4,
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"gene_symbol": "REV1",
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"biotype": "retained_intron",
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],
"gene_symbol": "REV1",
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"dbsnp": "rs1027984374",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 47,
"gnomad_exomes_af": 0.0000321527,
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"gnomad_exomes_ac": 47,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.057257652282714844,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.051,
"revel_prediction": "Benign",
"alphamissense_score": 0.0883,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.6,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.237,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001321454.2",
"gene_symbol": "REV1",
"hgnc_id": 14060,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.3356C>G",
"hgvs_p": "p.Pro1119Arg"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}