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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-18433712-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=18433712&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "20",
      "pos": 18433712,
      "ref": "A",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "ENST00000699568.1",
      "consequences": [
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "NM_001367614.1",
          "protein_id": "NP_001354543.1",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 777,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2334,
          "cdna_start": 912,
          "cdna_end": null,
          "cdna_length": 3420,
          "mane_select": "ENST00000699568.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "ENST00000699568.1",
          "protein_id": "ENSP00000514442.1",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 777,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2334,
          "cdna_start": 912,
          "cdna_end": null,
          "cdna_length": 3420,
          "mane_select": "NM_001367614.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.816T>C",
          "hgvs_p": "p.Cys272Cys",
          "transcript": "ENST00000699590.1",
          "protein_id": "ENSP00000514461.1",
          "transcript_support_level": null,
          "aa_start": 272,
          "aa_end": null,
          "aa_length": 763,
          "cds_start": 816,
          "cds_end": null,
          "cds_length": 2292,
          "cdna_start": 878,
          "cdna_end": null,
          "cdna_length": 3138,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.801T>C",
          "hgvs_p": "p.Cys267Cys",
          "transcript": "ENST00000699525.1",
          "protein_id": "ENSP00000514418.1",
          "transcript_support_level": null,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 758,
          "cds_start": 801,
          "cds_end": null,
          "cds_length": 2277,
          "cdna_start": 855,
          "cdna_end": null,
          "cdna_length": 3363,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.204T>C",
          "hgvs_p": "p.Cys68Cys",
          "transcript": "ENST00000357236.8",
          "protein_id": "ENSP00000349774.5",
          "transcript_support_level": 5,
          "aa_start": 68,
          "aa_end": null,
          "aa_length": 559,
          "cds_start": 204,
          "cds_end": null,
          "cds_length": 1680,
          "cdna_start": 1235,
          "cdna_end": null,
          "cdna_length": 3739,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.54T>C",
          "hgvs_p": "p.Cys18Cys",
          "transcript": "ENST00000329494.9",
          "protein_id": "ENSP00000328866.6",
          "transcript_support_level": 1,
          "aa_start": 18,
          "aa_end": null,
          "aa_length": 462,
          "cds_start": 54,
          "cds_end": null,
          "cds_length": 1389,
          "cdna_start": 54,
          "cdna_end": null,
          "cdna_length": 1389,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "n.733T>C",
          "hgvs_p": null,
          "transcript": "ENST00000377630.9",
          "protein_id": "ENSP00000366857.6",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3295,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "n.733T>C",
          "hgvs_p": null,
          "transcript": "ENST00000460891.5",
          "protein_id": "ENSP00000477872.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3156,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "NM_001367617.1",
          "protein_id": "NP_001354546.1",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 777,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2334,
          "cdna_start": 902,
          "cdna_end": null,
          "cdna_length": 3410,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "NM_001367618.1",
          "protein_id": "NP_001354547.1",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 777,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2334,
          "cdna_start": 1046,
          "cdna_end": null,
          "cdna_length": 3554,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "NM_001351683.4",
          "protein_id": "NP_001338612.2",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": 1048,
          "cdna_end": null,
          "cdna_length": 3538,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.858T>C",
          "hgvs_p": "p.Cys286Cys",
          "transcript": "NM_001351684.2",
          "protein_id": "NP_001338613.1",
          "transcript_support_level": null,
          "aa_start": 286,
          "aa_end": null,
          "aa_length": 771,
          "cds_start": 858,
          "cds_end": null,
          "cds_length": 2316,
          "cdna_start": 912,
          "cdna_end": null,
          "cdna_length": 3402,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.816T>C",
          "hgvs_p": "p.Cys272Cys",
          "transcript": "NM_001367612.1",
          "protein_id": "NP_001354541.1",
          "transcript_support_level": null,
          "aa_start": 272,
          "aa_end": null,
          "aa_length": 763,
          "cds_start": 816,
          "cds_end": null,
          "cds_length": 2292,
          "cdna_start": 870,
          "cdna_end": null,
          "cdna_length": 3378,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.816T>C",
          "hgvs_p": "p.Cys272Cys",
          "transcript": "NM_001367613.1",
          "protein_id": "NP_001354542.1",
          "transcript_support_level": null,
          "aa_start": 272,
          "aa_end": null,
          "aa_length": 763,
          "cds_start": 816,
          "cds_end": null,
          "cds_length": 2292,
          "cdna_start": 868,
          "cdna_end": null,
          "cdna_length": 3376,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.801T>C",
          "hgvs_p": "p.Cys267Cys",
          "transcript": "NM_001367611.1",
          "protein_id": "NP_001354540.1",
          "transcript_support_level": null,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 758,
          "cds_start": 801,
          "cds_end": null,
          "cds_length": 2277,
          "cdna_start": 857,
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          "cdna_length": 3365,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.801T>C",
          "hgvs_p": "p.Cys267Cys",
          "transcript": "NM_001099407.2",
          "protein_id": "NP_001092877.1",
          "transcript_support_level": null,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 752,
          "cds_start": 801,
          "cds_end": null,
          "cds_length": 2259,
          "cdna_start": 855,
          "cdna_end": null,
          "cdna_length": 3345,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.801T>C",
          "hgvs_p": "p.Cys267Cys",
          "transcript": "ENST00000262547.9",
          "protein_id": "ENSP00000262547.5",
          "transcript_support_level": 5,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 752,
          "cds_start": 801,
          "cds_end": null,
          "cds_length": 2259,
          "cdna_start": 1010,
          "cdna_end": null,
          "cdna_length": 3498,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.801T>C",
          "hgvs_p": "p.Cys267Cys",
          "transcript": "ENST00000358866.10",
          "protein_id": "ENSP00000351734.6",
          "transcript_support_level": 5,
          "aa_start": 267,
          "aa_end": null,
          "aa_length": 752,
          "cds_start": 801,
          "cds_end": null,
          "cds_length": 2259,
          "cdna_start": 824,
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          "cdna_length": 3310,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.459T>C",
          "hgvs_p": "p.Cys153Cys",
          "transcript": "NM_001367619.1",
          "protein_id": "NP_001354548.1",
          "transcript_support_level": null,
          "aa_start": 153,
          "aa_end": null,
          "aa_length": 638,
          "cds_start": 459,
          "cds_end": null,
          "cds_length": 1917,
          "cdna_start": 1098,
          "cdna_end": null,
          "cdna_length": 3588,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DZANK1",
          "gene_hgnc_id": 15858,
          "hgvs_c": "c.282T>C",
          "hgvs_p": "p.Cys94Cys",
          "transcript": "NM_018152.3",
          "protein_id": "NP_060622.2",
          "transcript_support_level": null,
          "aa_start": 94,
          "aa_end": null,
          "aa_length": 585,
          "cds_start": 282,
          "cds_end": null,
          "cds_length": 1758,
          "cdna_start": 787,
          "cdna_end": null,
          "cdna_length": 3295,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
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  "message": null
}