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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-25540303-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=25540303&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 25540303,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000278886.11",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-11-13705C>G",
"hgvs_p": null,
"transcript": "NM_025176.6",
"protein_id": "NP_079452.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1382,
"cds_start": -4,
"cds_end": null,
"cds_length": 4149,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4991,
"mane_select": "ENST00000278886.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-11-13705C>G",
"hgvs_p": null,
"transcript": "ENST00000278886.11",
"protein_id": "ENSP00000278886.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1382,
"cds_start": -4,
"cds_end": null,
"cds_length": 4149,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4991,
"mane_select": "NM_025176.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"5_prime_UTR_premature_start_codon_gain_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "n.-245C>G",
"hgvs_p": null,
"transcript": "ENST00000706725.1",
"protein_id": "ENSP00000516514.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3250,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_premature_start_codon_gain_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_011529186.3",
"protein_id": "XP_011527488.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1470,
"cds_start": -4,
"cds_end": null,
"cds_length": 4413,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5482,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_premature_start_codon_gain_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_011529187.3",
"protein_id": "XP_011527489.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1465,
"cds_start": -4,
"cds_end": null,
"cds_length": 4398,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5467,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_premature_start_codon_gain_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_047440024.1",
"protein_id": "XP_047295980.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1398,
"cds_start": -4,
"cds_end": null,
"cds_length": 4197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5266,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_premature_start_codon_gain_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_047440032.1",
"protein_id": "XP_047295988.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1049,
"cds_start": -4,
"cds_end": null,
"cds_length": 3150,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "n.71C>G",
"hgvs_p": null,
"transcript": "ENST00000706724.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5070,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "n.-245C>G",
"hgvs_p": null,
"transcript": "ENST00000706725.1",
"protein_id": "ENSP00000516514.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3250,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "n.-245C>G",
"hgvs_p": null,
"transcript": "ENST00000706725.1",
"protein_id": "ENSP00000516514.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3250,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_011529186.3",
"protein_id": "XP_011527488.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_011529187.3",
"protein_id": "XP_011527489.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
"hgvs_p": null,
"transcript": "XM_047440024.1",
"protein_id": "XP_047295980.1",
"transcript_support_level": null,
"aa_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
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"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-245C>G",
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"transcript": "XM_047440032.1",
"protein_id": "XP_047295988.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-11-13705C>G",
"hgvs_p": null,
"transcript": "NM_001318226.2",
"protein_id": "NP_001305155.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.11-13705C>G",
"hgvs_p": null,
"transcript": "XM_047440019.1",
"protein_id": "XP_047295975.1",
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},
{
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "NINL",
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"hgvs_c": "c.11-13705C>G",
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"transcript": "XM_047440020.1",
"protein_id": "XP_047295976.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 1,
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"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.-11-13705C>G",
"hgvs_p": null,
"transcript": "XM_011529188.1",
"protein_id": "XP_011527490.1",
"transcript_support_level": null,
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},
{
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],
"exon_rank": null,
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"gene_symbol": "NINL",
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"hgvs_c": "c.-12+425C>G",
"hgvs_p": null,
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],
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"gene_symbol": "NINL",
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"hgvs_c": "c.-11-13705C>G",
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},
{
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],
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"gene_symbol": "NINL",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.44-13705C>G",
"hgvs_p": null,
"transcript": "XM_047440022.1",
"protein_id": "XP_047295978.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NINL",
"gene_hgnc_id": 29163,
"hgvs_c": "c.11-13705C>G",
"hgvs_p": null,
"transcript": "XM_047440025.1",
"protein_id": "XP_047295981.1",
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}
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}