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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-3800799-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=3800799&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 7,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP6_Moderate",
            "BP7"
          ],
          "effects": [
            "synonymous_variant"
          ],
          "gene_symbol": "CDC25B",
          "hgnc_id": 1726,
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": -5,
          "transcript": "NM_021873.4",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM2,BP4_Strong,BP6_Moderate,BP7",
      "acmg_score": -5,
      "allele_count_reference_population": 14,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.74,
      "chr": "20",
      "clinvar_classification": "Likely benign",
      "clinvar_disease": "not provided",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.7400000095367432,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 580,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3119,
          "cdna_start": 738,
          "cds_end": null,
          "cds_length": 1743,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_021873.4",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000245960.10",
          "protein_coding": true,
          "protein_id": "NP_068659.1",
          "strand": true,
          "transcript": "NM_021873.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 580,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3119,
          "cdna_start": 738,
          "cds_end": null,
          "cds_length": 1743,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000245960.10",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_021873.4",
          "protein_coding": true,
          "protein_id": "ENSP00000245960.5",
          "strand": true,
          "transcript": "ENST00000245960.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 566,
          "aa_ref": "P",
          "aa_start": 158,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3096,
          "cdna_start": 715,
          "cds_end": null,
          "cds_length": 1701,
          "cds_start": 474,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000439880.6",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.474C>T",
          "hgvs_p": "p.Pro158Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000405972.2",
          "strand": true,
          "transcript": "ENST00000439880.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 539,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1978,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1620,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000340833.4",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.460-172C>T",
          "hgvs_p": null,
          "intron_rank": 5,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000339170.4",
          "strand": true,
          "transcript": "ENST00000340833.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1960,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000467519.5",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "n.457C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000467519.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 605,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3201,
          "cdna_start": 742,
          "cds_end": null,
          "cds_length": 1818,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 17,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000855782.1",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000525841.1",
          "strand": true,
          "transcript": "ENST00000855782.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 589,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3692,
          "cdna_start": 1284,
          "cds_end": null,
          "cds_length": 1770,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000855780.1",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000525839.1",
          "strand": true,
          "transcript": "ENST00000855780.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 580,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3722,
          "cdna_start": 726,
          "cds_end": null,
          "cds_length": 1743,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 17,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000855779.1",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000525838.1",
          "strand": true,
          "transcript": "ENST00000855779.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 573,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3091,
          "cdna_start": 736,
          "cds_end": null,
          "cds_length": 1722,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000940254.1",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000610313.1",
          "strand": true,
          "transcript": "ENST00000940254.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 566,
          "aa_ref": "P",
          "aa_start": 158,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3077,
          "cdna_start": 696,
          "cds_end": null,
          "cds_length": 1701,
          "cds_start": 474,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_004358.5",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.474C>T",
          "hgvs_p": "p.Pro158Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_004349.1",
          "strand": true,
          "transcript": "NM_004358.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 553,
          "aa_ref": "P",
          "aa_start": 172,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3076,
          "cdna_start": 773,
          "cds_end": null,
          "cds_length": 1662,
          "cds_start": 516,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 15,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000855781.1",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.516C>T",
          "hgvs_p": "p.Pro172Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000525840.1",
          "strand": true,
          "transcript": "ENST00000855781.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 516,
          "aa_ref": "P",
          "aa_start": 108,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2886,
          "cdna_start": 505,
          "cds_end": null,
          "cds_length": 1551,
          "cds_start": 324,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001287516.2",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.324C>T",
          "hgvs_p": "p.Pro108Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274445.1",
          "strand": true,
          "transcript": "NM_001287516.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 516,
          "aa_ref": "P",
          "aa_start": 108,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3071,
          "cdna_start": 684,
          "cds_end": null,
          "cds_length": 1551,
          "cds_start": 324,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000344256.10",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.324C>T",
          "hgvs_p": "p.Pro108Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000339125.6",
          "strand": true,
          "transcript": "ENST00000344256.10",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 502,
          "aa_ref": "P",
          "aa_start": 94,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2844,
          "cdna_start": 463,
          "cds_end": null,
          "cds_length": 1509,
          "cds_start": 282,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001287517.2",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.282C>T",
          "hgvs_p": "p.Pro94Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274446.1",
          "strand": true,
          "transcript": "NM_001287517.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 489,
          "aa_ref": "P",
          "aa_start": 108,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2805,
          "cdna_start": 505,
          "cds_end": null,
          "cds_length": 1470,
          "cds_start": 324,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 15,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001287518.2",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.324C>T",
          "hgvs_p": "p.Pro108Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274447.1",
          "strand": true,
          "transcript": "NM_001287518.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 489,
          "aa_ref": "P",
          "aa_start": 108,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2990,
          "cdna_start": 684,
          "cds_end": null,
          "cds_length": 1470,
          "cds_start": 324,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 15,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000379598.9",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.324C>T",
          "hgvs_p": "p.Pro108Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000368918.5",
          "strand": true,
          "transcript": "ENST00000379598.9",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 468,
          "aa_ref": "P",
          "aa_start": 60,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2746,
          "cdna_start": 365,
          "cds_end": null,
          "cds_length": 1407,
          "cds_start": 180,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001287519.2",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.180C>T",
          "hgvs_p": "p.Pro60Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274448.1",
          "strand": true,
          "transcript": "NM_001287519.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P",
          "aa_end": null,
          "aa_length": 468,
          "aa_ref": "P",
          "aa_start": 60,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2788,
          "cdna_start": 407,
          "cds_end": null,
          "cds_length": 1407,
          "cds_start": 180,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 16,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_001287520.2",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.180C>T",
          "hgvs_p": "p.Pro60Pro",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001274449.1",
          "strand": true,
          "transcript": "NM_001287520.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 539,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2996,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1620,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_021872.4",
          "gene_hgnc_id": 1726,
          "gene_symbol": "CDC25B",
          "hgvs_c": "c.460-172C>T",
          "hgvs_p": null,
          "intron_rank": 5,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_068658.1",
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      "phenotype_combined": "not provided",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.