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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-417906-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=417906&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 417906,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001410770.1",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "NM_031229.4",
"protein_id": "NP_112506.2",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 510,
"cds_start": 436,
"cds_end": null,
"cds_length": 1533,
"cdna_start": 895,
"cdna_end": null,
"cdna_length": 3701,
"mane_select": "ENST00000356286.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_031229.4"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000356286.10",
"protein_id": "ENSP00000348632.6",
"transcript_support_level": 1,
"aa_start": 146,
"aa_end": null,
"aa_length": 510,
"cds_start": 436,
"cds_end": null,
"cds_length": 1533,
"cdna_start": 895,
"cdna_end": null,
"cdna_length": 3701,
"mane_select": "NM_031229.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000356286.10"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.310G>C",
"hgvs_p": "p.Glu104Gln",
"transcript": "ENST00000353660.7",
"protein_id": "ENSP00000254960.5",
"transcript_support_level": 1,
"aa_start": 104,
"aa_end": null,
"aa_length": 468,
"cds_start": 310,
"cds_end": null,
"cds_length": 1407,
"cdna_start": 878,
"cdna_end": null,
"cdna_length": 2511,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000353660.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "n.310G>C",
"hgvs_p": null,
"transcript": "ENST00000382181.2",
"protein_id": "ENSP00000371616.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2208,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000382181.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "n.436G>C",
"hgvs_p": null,
"transcript": "ENST00000382214.7",
"protein_id": "ENSP00000371649.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2752,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000382214.7"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.604G>C",
"hgvs_p": "p.Glu202Gln",
"transcript": "ENST00000952173.1",
"protein_id": "ENSP00000622232.1",
"transcript_support_level": null,
"aa_start": 202,
"aa_end": null,
"aa_length": 566,
"cds_start": 604,
"cds_end": null,
"cds_length": 1701,
"cdna_start": 1057,
"cdna_end": null,
"cdna_length": 2688,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952173.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.556G>C",
"hgvs_p": "p.Glu186Gln",
"transcript": "ENST00000952176.1",
"protein_id": "ENSP00000622235.1",
"transcript_support_level": null,
"aa_start": 186,
"aa_end": null,
"aa_length": 550,
"cds_start": 556,
"cds_end": null,
"cds_length": 1653,
"cdna_start": 976,
"cdna_end": null,
"cdna_length": 2609,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952176.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.553G>C",
"hgvs_p": "p.Glu185Gln",
"transcript": "ENST00000878596.1",
"protein_id": "ENSP00000548655.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 549,
"cds_start": 553,
"cds_end": null,
"cds_length": 1650,
"cdna_start": 1243,
"cdna_end": null,
"cdna_length": 2876,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878596.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.550G>C",
"hgvs_p": "p.Glu184Gln",
"transcript": "ENST00000952178.1",
"protein_id": "ENSP00000622237.1",
"transcript_support_level": null,
"aa_start": 184,
"aa_end": null,
"aa_length": 548,
"cds_start": 550,
"cds_end": null,
"cds_length": 1647,
"cdna_start": 734,
"cdna_end": null,
"cdna_length": 2363,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952178.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.547G>C",
"hgvs_p": "p.Glu183Gln",
"transcript": "ENST00000952172.1",
"protein_id": "ENSP00000622231.1",
"transcript_support_level": null,
"aa_start": 183,
"aa_end": null,
"aa_length": 547,
"cds_start": 547,
"cds_end": null,
"cds_length": 1644,
"cdna_start": 1014,
"cdna_end": null,
"cdna_length": 2643,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952172.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.553G>C",
"hgvs_p": "p.Glu185Gln",
"transcript": "ENST00000952177.1",
"protein_id": "ENSP00000622236.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 544,
"cds_start": 553,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 977,
"cdna_end": null,
"cdna_length": 2588,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952177.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000932273.1",
"protein_id": "ENSP00000602332.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 538,
"cds_start": 436,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 889,
"cdna_end": null,
"cdna_length": 2602,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932273.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.487G>C",
"hgvs_p": "p.Glu163Gln",
"transcript": "NM_001410770.1",
"protein_id": "NP_001397699.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 527,
"cds_start": 487,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 946,
"cdna_end": null,
"cdna_length": 3752,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001410770.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.487G>C",
"hgvs_p": "p.Glu163Gln",
"transcript": "ENST00000697805.1",
"protein_id": "ENSP00000513446.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 527,
"cds_start": 487,
"cds_end": null,
"cds_length": 1584,
"cdna_start": 741,
"cdna_end": null,
"cdna_length": 2360,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000697805.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.487G>C",
"hgvs_p": "p.Glu163Gln",
"transcript": "ENST00000952174.1",
"protein_id": "ENSP00000622233.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 523,
"cds_start": 487,
"cds_end": null,
"cds_length": 1572,
"cdna_start": 928,
"cdna_end": null,
"cdna_length": 2546,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952174.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.487G>C",
"hgvs_p": "p.Glu163Gln",
"transcript": "ENST00000952175.1",
"protein_id": "ENSP00000622234.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 515,
"cds_start": 487,
"cds_end": null,
"cds_length": 1548,
"cdna_start": 922,
"cdna_end": null,
"cdna_length": 2514,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952175.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000878601.1",
"protein_id": "ENSP00000548660.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 509,
"cds_start": 436,
"cds_end": null,
"cds_length": 1530,
"cdna_start": 859,
"cdna_end": null,
"cdna_length": 2484,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878601.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000952170.1",
"protein_id": "ENSP00000622229.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 508,
"cds_start": 436,
"cds_end": null,
"cds_length": 1527,
"cdna_start": 910,
"cdna_end": null,
"cdna_length": 2541,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952170.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000878595.1",
"protein_id": "ENSP00000548654.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 507,
"cds_start": 436,
"cds_end": null,
"cds_length": 1524,
"cdna_start": 1155,
"cdna_end": null,
"cdna_length": 2779,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878595.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000878597.1",
"protein_id": "ENSP00000548656.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 506,
"cds_start": 436,
"cds_end": null,
"cds_length": 1521,
"cdna_start": 910,
"cdna_end": null,
"cdna_length": 2531,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878597.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000878599.1",
"protein_id": "ENSP00000548658.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 506,
"cds_start": 436,
"cds_end": null,
"cds_length": 1521,
"cdna_start": 879,
"cdna_end": null,
"cdna_length": 2500,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878599.1"
},
{
"aa_ref": "E",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RBCK1",
"gene_hgnc_id": 15864,
"hgvs_c": "c.436G>C",
"hgvs_p": "p.Glu146Gln",
"transcript": "ENST00000878602.1",
"protein_id": "ENSP00000548661.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 505,
"cds_start": 436,
"cds_end": null,
"cds_length": 1518,
"cdna_start": 828,
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],
"verdict": "Uncertain_significance",
"transcript": "NM_001410770.1",
"gene_symbol": "RBCK1",
"hgnc_id": 15864,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.487G>C",
"hgvs_p": "p.Glu163Gln"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}