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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-45947863-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=45947863&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 45947863,
"ref": "T",
"alt": "C",
"effect": "3_prime_UTR_variant",
"transcript": "NM_022104.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "NM_022104.4",
"protein_id": "NP_071387.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 704,
"cds_start": null,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2689,
"mane_select": "ENST00000372409.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_022104.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000372409.8",
"protein_id": "ENSP00000361486.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 704,
"cds_start": null,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2689,
"mane_select": "NM_022104.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372409.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*250T>C",
"hgvs_p": null,
"transcript": "ENST00000479348.2",
"protein_id": "ENSP00000480607.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 303,
"cds_start": null,
"cds_end": null,
"cds_length": 912,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1324,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000479348.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904036.1",
"protein_id": "ENSP00000574095.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 718,
"cds_start": null,
"cds_end": null,
"cds_length": 2157,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2729,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904036.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904035.1",
"protein_id": "ENSP00000574094.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 713,
"cds_start": null,
"cds_end": null,
"cds_length": 2142,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2719,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904035.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944657.1",
"protein_id": "ENSP00000614716.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 713,
"cds_start": null,
"cds_end": null,
"cds_length": 2142,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2712,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944657.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944658.1",
"protein_id": "ENSP00000614717.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 708,
"cds_start": null,
"cds_end": null,
"cds_length": 2127,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2694,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944658.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904032.1",
"protein_id": "ENSP00000574091.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 704,
"cds_start": null,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2810,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904032.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904039.1",
"protein_id": "ENSP00000574098.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 704,
"cds_start": null,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2969,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904039.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904040.1",
"protein_id": "ENSP00000574099.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 704,
"cds_start": null,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2716,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904040.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000920264.1",
"protein_id": "ENSP00000590323.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 703,
"cds_start": null,
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"cds_length": 2112,
"cdna_start": null,
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"cdna_length": 2684,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920264.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
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"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944659.1",
"protein_id": "ENSP00000614718.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 702,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944659.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904037.1",
"protein_id": "ENSP00000574096.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 698,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000904037.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
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"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
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"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
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"transcript": "ENST00000920263.1",
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"biotype": "protein_coding",
"feature": "ENST00000920263.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944656.1",
"protein_id": "ENSP00000614715.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000944656.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
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"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
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"transcript": "ENST00000944655.1",
"protein_id": "ENSP00000614714.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000944655.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
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"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904034.1",
"protein_id": "ENSP00000574093.1",
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000904034.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944654.1",
"protein_id": "ENSP00000614713.1",
"transcript_support_level": null,
"aa_start": null,
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"mane_select": null,
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"feature": "ENST00000944654.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
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"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
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"transcript": "ENST00000920265.1",
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"feature": "ENST00000920265.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000920266.1",
"protein_id": "ENSP00000590325.1",
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"feature": "ENST00000920266.1"
},
{
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"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 16,
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"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000904033.1",
"protein_id": "ENSP00000574092.1",
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"aa_start": null,
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"aa_length": 658,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 2556,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904033.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PCIF1",
"gene_hgnc_id": 16200,
"hgvs_c": "c.*108T>C",
"hgvs_p": null,
"transcript": "ENST00000944661.1",
"protein_id": "ENSP00000614720.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 630,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 2342,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944661.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
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}
],
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}