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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-50935152-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=50935152&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 50935152,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001317034.1",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.763A>G",
"hgvs_p": "p.Thr255Ala",
"transcript": "NM_003859.3",
"protein_id": "NP_003850.1",
"transcript_support_level": null,
"aa_start": 255,
"aa_end": null,
"aa_length": 260,
"cds_start": 763,
"cds_end": null,
"cds_length": 783,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000371588.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003859.3"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.763A>G",
"hgvs_p": "p.Thr255Ala",
"transcript": "ENST00000371588.10",
"protein_id": "ENSP00000360644.5",
"transcript_support_level": 1,
"aa_start": 255,
"aa_end": null,
"aa_length": 260,
"cds_start": 763,
"cds_end": null,
"cds_length": 783,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_003859.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371588.10"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.844A>G",
"hgvs_p": "p.Thr282Ala",
"transcript": "ENST00000371582.8",
"protein_id": "ENSP00000360638.4",
"transcript_support_level": 1,
"aa_start": 282,
"aa_end": null,
"aa_length": 287,
"cds_start": 844,
"cds_end": null,
"cds_length": 864,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371582.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.*218A>G",
"hgvs_p": null,
"transcript": "ENST00000466152.5",
"protein_id": "ENSP00000507119.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000466152.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.*218A>G",
"hgvs_p": null,
"transcript": "ENST00000466152.5",
"protein_id": "ENSP00000507119.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000466152.5"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.868A>G",
"hgvs_p": "p.Thr290Ala",
"transcript": "NM_001317034.1",
"protein_id": "NP_001303963.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 295,
"cds_start": 868,
"cds_end": null,
"cds_length": 888,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001317034.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.868A>G",
"hgvs_p": "p.Thr290Ala",
"transcript": "ENST00000371584.9",
"protein_id": "ENSP00000360640.5",
"transcript_support_level": 5,
"aa_start": 290,
"aa_end": null,
"aa_length": 295,
"cds_start": 868,
"cds_end": null,
"cds_length": 888,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000371584.9"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.844A>G",
"hgvs_p": "p.Thr282Ala",
"transcript": "NM_001317035.1",
"protein_id": "NP_001303964.1",
"transcript_support_level": null,
"aa_start": 282,
"aa_end": null,
"aa_length": 287,
"cds_start": 844,
"cds_end": null,
"cds_length": 864,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001317035.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.760A>G",
"hgvs_p": "p.Thr254Ala",
"transcript": "ENST00000970159.1",
"protein_id": "ENSP00000640218.1",
"transcript_support_level": null,
"aa_start": 254,
"aa_end": null,
"aa_length": 259,
"cds_start": 760,
"cds_end": null,
"cds_length": 780,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970159.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.727A>G",
"hgvs_p": "p.Thr243Ala",
"transcript": "ENST00000922811.1",
"protein_id": "ENSP00000592870.1",
"transcript_support_level": null,
"aa_start": 243,
"aa_end": null,
"aa_length": 248,
"cds_start": 727,
"cds_end": null,
"cds_length": 747,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922811.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.694A>G",
"hgvs_p": "p.Thr232Ala",
"transcript": "NM_001317036.1",
"protein_id": "NP_001303965.1",
"transcript_support_level": null,
"aa_start": 232,
"aa_end": null,
"aa_length": 237,
"cds_start": 694,
"cds_end": null,
"cds_length": 714,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001317036.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.667A>G",
"hgvs_p": "p.Thr223Ala",
"transcript": "ENST00000858753.1",
"protein_id": "ENSP00000528812.1",
"transcript_support_level": null,
"aa_start": 223,
"aa_end": null,
"aa_length": 228,
"cds_start": 667,
"cds_end": null,
"cds_length": 687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858753.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.598A>G",
"hgvs_p": "p.Thr200Ala",
"transcript": "ENST00000858754.1",
"protein_id": "ENSP00000528813.1",
"transcript_support_level": null,
"aa_start": 200,
"aa_end": null,
"aa_length": 205,
"cds_start": 598,
"cds_end": null,
"cds_length": 618,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858754.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.430A>G",
"hgvs_p": "p.Thr144Ala",
"transcript": "ENST00000922813.1",
"protein_id": "ENSP00000592872.1",
"transcript_support_level": null,
"aa_start": 144,
"aa_end": null,
"aa_length": 149,
"cds_start": 430,
"cds_end": null,
"cds_length": 450,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922813.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.379A>G",
"hgvs_p": "p.Thr127Ala",
"transcript": "ENST00000683466.1",
"protein_id": "ENSP00000507404.1",
"transcript_support_level": null,
"aa_start": 127,
"aa_end": null,
"aa_length": 132,
"cds_start": 379,
"cds_end": null,
"cds_length": 399,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000683466.1"
},
{
"aa_ref": "T",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "c.361A>G",
"hgvs_p": "p.Thr121Ala",
"transcript": "ENST00000922812.1",
"protein_id": "ENSP00000592871.1",
"transcript_support_level": null,
"aa_start": 121,
"aa_end": null,
"aa_length": 126,
"cds_start": 361,
"cds_end": null,
"cds_length": 381,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922812.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.533A>G",
"hgvs_p": null,
"transcript": "ENST00000494752.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000494752.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.2019A>G",
"hgvs_p": null,
"transcript": "ENST00000682366.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000682366.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.1243A>G",
"hgvs_p": null,
"transcript": "ENST00000682713.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000682713.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.*278A>G",
"hgvs_p": null,
"transcript": "ENST00000683048.1",
"protein_id": "ENSP00000506986.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000683048.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.1534A>G",
"hgvs_p": null,
"transcript": "ENST00000684193.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000684193.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPM1",
"gene_hgnc_id": 3005,
"hgvs_c": "n.794A>G",
"hgvs_p": null,
"transcript": "NR_133648.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_133648.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
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"splice_prediction_selected": "Benign",
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"bayesdelnoaf_prediction": "Benign",
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{
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"verdict": "Uncertain_significance",
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{
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],
"clinvar_disease": "Congenital disorder of glycosylation type 1E,Inborn genetic diseases",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "US:2",
"phenotype_combined": "Congenital disorder of glycosylation type 1E|Inborn genetic diseases",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}