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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-56386407-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=56386407&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "20",
      "pos": 56386407,
      "ref": "T",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000395915.8",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "NM_198437.3",
          "protein_id": "NP_940839.1",
          "transcript_support_level": null,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 222,
          "cdna_end": null,
          "cdna_length": 2033,
          "mane_select": "ENST00000395915.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000395915.8",
          "protein_id": "ENSP00000379251.3",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 222,
          "cdna_end": null,
          "cdna_length": 2033,
          "mane_select": "NM_198437.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000312783.10",
          "protein_id": "ENSP00000321591.6",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 412,
          "cdna_end": null,
          "cdna_length": 2223,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000347343.6",
          "protein_id": "ENSP00000216911.2",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 437,
          "cdna_end": null,
          "cdna_length": 2248,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000371356.6",
          "protein_id": "ENSP00000360407.2",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 301,
          "cdna_end": null,
          "cdna_length": 2112,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000395913.7",
          "protein_id": "ENSP00000379249.3",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 358,
          "cdna_end": null,
          "cdna_length": 2169,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "ENST00000395914.5",
          "protein_id": "ENSP00000379250.1",
          "transcript_support_level": 1,
          "aa_start": 57,
          "aa_end": null,
          "aa_length": 403,
          "cds_start": 169,
          "cds_end": null,
          "cds_length": 1212,
          "cdna_start": 426,
          "cdna_end": null,
          "cdna_length": 2238,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.271A>T",
          "hgvs_p": "p.Ile91Phe",
          "transcript": "NM_001424418.1",
          "protein_id": "NP_001411347.1",
          "transcript_support_level": null,
          "aa_start": 91,
          "aa_end": null,
          "aa_length": 437,
          "cds_start": 271,
          "cds_end": null,
          "cds_length": 1314,
          "cdna_start": 805,
          "cdna_end": null,
          "cdna_length": 2616,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.271A>T",
          "hgvs_p": "p.Ile91Phe",
          "transcript": "NM_001424419.1",
          "protein_id": "NP_001411348.1",
          "transcript_support_level": null,
          "aa_start": 91,
          "aa_end": null,
          "aa_length": 437,
          "cds_start": 271,
          "cds_end": null,
          "cds_length": 1314,
          "cdna_start": 819,
          "cdna_end": null,
          "cdna_length": 2630,
          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "I",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "AURKA",
          "gene_hgnc_id": 11393,
          "hgvs_c": "c.271A>T",
          "hgvs_p": "p.Ile91Phe",
          "transcript": "NM_001424420.1",
          "protein_id": "NP_001411349.1",
          "transcript_support_level": null,
          "aa_start": 91,
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          "cds_start": 271,
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          "cdna_start": 1030,
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        {
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          "hgvs_c": "c.169A>T",
          "hgvs_p": "p.Ile57Phe",
          "transcript": "NM_001323303.2",
          "protein_id": "NP_001310232.1",
          "transcript_support_level": null,
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          "cds_start": 169,
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          "mane_select": null,
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          "hgvs_c": "c.169A>T",
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        {
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          "hgvs_c": "c.169A>T",
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          "transcript": "NM_198433.3",
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        {
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        {
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          ],
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          "hgvs_p": "p.Ile57Phe",
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      "gnomad_exomes_af": 6.84045e-7,
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      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.0751200020313263,
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "bayesdelnoaf_score": -0.41,
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      "acmg_by_gene": [
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}