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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 20-58903708-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=58903708&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "20",
      "pos": 58903708,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "ENST00000354359.12",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.349G>C",
          "hgvs_p": "p.Val117Leu",
          "transcript": "NM_000516.7",
          "protein_id": "NP_000507.1",
          "transcript_support_level": null,
          "aa_start": 117,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": 349,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": 655,
          "cdna_end": null,
          "cdna_length": 1854,
          "mane_select": "ENST00000371085.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.349G>C",
          "hgvs_p": "p.Val117Leu",
          "transcript": "ENST00000371085.8",
          "protein_id": "ENSP00000360126.3",
          "transcript_support_level": 1,
          "aa_start": 117,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": 349,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": 655,
          "cdna_end": null,
          "cdna_length": 1854,
          "mane_select": "NM_000516.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.2281G>C",
          "hgvs_p": "p.Val761Leu",
          "transcript": "ENST00000676826.2",
          "protein_id": "ENSP00000504675.2",
          "transcript_support_level": null,
          "aa_start": 761,
          "aa_end": null,
          "aa_length": 1038,
          "cds_start": 2281,
          "cds_end": null,
          "cds_length": 3117,
          "cdna_start": 2833,
          "cdna_end": null,
          "cdna_length": 4032,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.2236G>C",
          "hgvs_p": "p.Val746Leu",
          "transcript": "ENST00000371102.8",
          "protein_id": "ENSP00000360143.4",
          "transcript_support_level": 5,
          "aa_start": 746,
          "aa_end": null,
          "aa_length": 1023,
          "cds_start": 2236,
          "cds_end": null,
          "cds_length": 3072,
          "cdna_start": 2239,
          "cdna_end": null,
          "cdna_length": 3438,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.352G>C",
          "hgvs_p": "p.Val118Leu",
          "transcript": "ENST00000354359.12",
          "protein_id": "ENSP00000346328.7",
          "transcript_support_level": 1,
          "aa_start": 118,
          "aa_end": null,
          "aa_length": 395,
          "cds_start": 352,
          "cds_end": null,
          "cds_length": 1188,
          "cdna_start": 658,
          "cdna_end": null,
          "cdna_length": 1857,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.307G>C",
          "hgvs_p": "p.Val103Leu",
          "transcript": "ENST00000371095.7",
          "protein_id": "ENSP00000360136.3",
          "transcript_support_level": 1,
          "aa_start": 103,
          "aa_end": null,
          "aa_length": 380,
          "cds_start": 307,
          "cds_end": null,
          "cds_length": 1143,
          "cdna_start": 732,
          "cdna_end": null,
          "cdna_length": 1931,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.304G>C",
          "hgvs_p": "p.Val102Leu",
          "transcript": "ENST00000265620.11",
          "protein_id": "ENSP00000265620.7",
          "transcript_support_level": 1,
          "aa_start": 102,
          "aa_end": null,
          "aa_length": 379,
          "cds_start": 304,
          "cds_end": null,
          "cds_length": 1140,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 1866,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.175G>C",
          "hgvs_p": "p.Val59Leu",
          "transcript": "ENST00000470512.6",
          "protein_id": "ENSP00000499552.2",
          "transcript_support_level": 5,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 336,
          "cds_start": 175,
          "cds_end": null,
          "cds_length": 1011,
          "cdna_start": 423,
          "cdna_end": null,
          "cdna_length": 1622,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.175G>C",
          "hgvs_p": "p.Val59Leu",
          "transcript": "ENST00000480232.6",
          "protein_id": "ENSP00000499545.2",
          "transcript_support_level": 5,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 336,
          "cds_start": 175,
          "cds_end": null,
          "cds_length": 1011,
          "cdna_start": 368,
          "cdna_end": null,
          "cdna_length": 1554,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.175G>C",
          "hgvs_p": "p.Val59Leu",
          "transcript": "ENST00000663479.2",
          "protein_id": "ENSP00000499353.2",
          "transcript_support_level": null,
          "aa_start": 59,
          "aa_end": null,
          "aa_length": 336,
          "cds_start": 175,
          "cds_end": null,
          "cds_length": 1011,
          "cdna_start": 467,
          "cdna_end": null,
          "cdna_length": 1666,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.172G>C",
          "hgvs_p": "p.Val58Leu",
          "transcript": "ENST00000477931.5",
          "protein_id": "ENSP00000499660.1",
          "transcript_support_level": 1,
          "aa_start": 58,
          "aa_end": null,
          "aa_length": 335,
          "cds_start": 172,
          "cds_end": null,
          "cds_length": 1008,
          "cdna_start": 464,
          "cdna_end": null,
          "cdna_length": 1663,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000462499.6",
          "protein_id": "ENSP00000499758.2",
          "transcript_support_level": 2,
          "aa_start": 44,
          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
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          "cds_length": 966,
          "cdna_start": 426,
          "cdna_end": null,
          "cdna_length": 1625,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000467227.6",
          "protein_id": "ENSP00000499681.2",
          "transcript_support_level": 3,
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          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
          "cds_end": null,
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          "cdna_start": 290,
          "cdna_end": null,
          "cdna_length": 1489,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000478585.6",
          "protein_id": "ENSP00000499762.2",
          "transcript_support_level": 2,
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          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
          "cds_end": null,
          "cds_length": 966,
          "cdna_start": 362,
          "cdna_end": null,
          "cdna_length": 1548,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000481039.6",
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          "cdna_start": 218,
          "cdna_end": null,
          "cdna_length": 1417,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000485673.6",
          "protein_id": "ENSP00000499334.2",
          "transcript_support_level": 5,
          "aa_start": 44,
          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
          "cds_end": null,
          "cds_length": 966,
          "cdna_start": 594,
          "cdna_end": null,
          "cdna_length": 1793,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000488546.6",
          "protein_id": "ENSP00000499332.2",
          "transcript_support_level": 5,
          "aa_start": 44,
          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
          "cds_end": null,
          "cds_length": 966,
          "cdna_start": 208,
          "cdna_end": null,
          "cdna_length": 1407,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.130G>C",
          "hgvs_p": "p.Val44Leu",
          "transcript": "ENST00000492907.6",
          "protein_id": "ENSP00000499443.2",
          "transcript_support_level": 3,
          "aa_start": 44,
          "aa_end": null,
          "aa_length": 321,
          "cds_start": 130,
          "cds_end": null,
          "cds_length": 966,
          "cdna_start": 300,
          "cdna_end": null,
          "cdna_length": 1499,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "n.855G>C",
          "hgvs_p": null,
          "transcript": "ENST00000475610.2",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1895,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.*255G>C",
          "hgvs_p": null,
          "transcript": "NM_016592.5",
          "protein_id": "NP_057676.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 245,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 738,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2551,
          "mane_select": null,
          "mane_plus": "ENST00000371075.7",
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "GNAS",
          "gene_hgnc_id": 4392,
          "hgvs_c": "c.*255G>C",
          "hgvs_p": null,
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}