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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 20-58997674-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=20&pos=58997674&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "20",
"pos": 58997674,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000217131.6",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "NM_001336.4",
"protein_id": "NP_001327.2",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 303,
"cds_start": 567,
"cds_end": null,
"cds_length": 912,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 1502,
"mane_select": "ENST00000217131.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000217131.6",
"protein_id": "ENSP00000217131.5",
"transcript_support_level": 1,
"aa_start": 189,
"aa_end": null,
"aa_length": 303,
"cds_start": 567,
"cds_end": null,
"cds_length": 912,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 1502,
"mane_select": "NM_001336.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.567G>A",
"hgvs_p": null,
"transcript": "ENST00000503833.7",
"protein_id": "ENSP00000506414.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 972,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.660G>A",
"hgvs_p": "p.Arg220Arg",
"transcript": "ENST00000680995.1",
"protein_id": "ENSP00000505169.1",
"transcript_support_level": null,
"aa_start": 220,
"aa_end": null,
"aa_length": 334,
"cds_start": 660,
"cds_end": null,
"cds_length": 1005,
"cdna_start": 773,
"cdna_end": null,
"cdna_length": 1575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000681175.1",
"protein_id": "ENSP00000505215.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 319,
"cds_start": 567,
"cds_end": null,
"cds_length": 960,
"cdna_start": 649,
"cdna_end": null,
"cdna_length": 2825,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680879.1",
"protein_id": "ENSP00000505285.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 314,
"cds_start": 567,
"cds_end": null,
"cds_length": 945,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 1833,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680738.1",
"protein_id": "ENSP00000506672.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 294,
"cds_start": 567,
"cds_end": null,
"cds_length": 885,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 1632,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680753.1",
"protein_id": "ENSP00000505409.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 294,
"cds_start": 567,
"cds_end": null,
"cds_length": 885,
"cdna_start": 676,
"cdna_end": null,
"cdna_length": 1643,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.525G>A",
"hgvs_p": "p.Arg175Arg",
"transcript": "ENST00000681011.1",
"protein_id": "ENSP00000505520.1",
"transcript_support_level": null,
"aa_start": 175,
"aa_end": null,
"aa_length": 289,
"cds_start": 525,
"cds_end": null,
"cds_length": 870,
"cdna_start": 541,
"cdna_end": null,
"cdna_length": 10849,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000679948.1",
"protein_id": "ENSP00000505895.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 288,
"cds_start": 567,
"cds_end": null,
"cds_length": 867,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 2360,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000681416.1",
"protein_id": "ENSP00000506588.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 274,
"cds_start": 567,
"cds_end": null,
"cds_length": 825,
"cdna_start": 669,
"cdna_end": null,
"cdna_length": 2214,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680880.1",
"protein_id": "ENSP00000506691.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 248,
"cds_start": 567,
"cds_end": null,
"cds_length": 747,
"cdna_start": 693,
"cdna_end": null,
"cdna_length": 1334,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000681877.1",
"protein_id": "ENSP00000506136.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 243,
"cds_start": 567,
"cds_end": null,
"cds_length": 732,
"cdna_start": 713,
"cdna_end": null,
"cdna_length": 966,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680386.1",
"protein_id": "ENSP00000506279.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 242,
"cds_start": 567,
"cds_end": null,
"cds_length": 729,
"cdna_start": 1246,
"cdna_end": null,
"cdna_length": 1861,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "c.567G>A",
"hgvs_p": "p.Arg189Arg",
"transcript": "ENST00000680206.1",
"protein_id": "ENSP00000505861.1",
"transcript_support_level": null,
"aa_start": 189,
"aa_end": null,
"aa_length": 218,
"cds_start": 567,
"cds_end": null,
"cds_length": 657,
"cdna_start": 686,
"cdna_end": null,
"cdna_length": 1332,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.709G>A",
"hgvs_p": null,
"transcript": "ENST00000488395.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3198,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.675G>A",
"hgvs_p": null,
"transcript": "ENST00000679391.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2212,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.587G>A",
"hgvs_p": null,
"transcript": "ENST00000679991.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1330,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.754G>A",
"hgvs_p": null,
"transcript": "ENST00000680156.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2427,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.567G>A",
"hgvs_p": null,
"transcript": "ENST00000680263.1",
"protein_id": "ENSP00000506111.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1908,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.*184G>A",
"hgvs_p": null,
"transcript": "ENST00000680283.1",
"protein_id": "ENSP00000506675.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 1338,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.567G>A",
"hgvs_p": null,
"transcript": "ENST00000680300.1",
"protein_id": "ENSP00000505432.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1456,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTSZ",
"gene_hgnc_id": 2547,
"hgvs_c": "n.*190G>A",
"hgvs_p": null,
"transcript": "ENST00000680456.1",
"protein_id": "ENSP00000505693.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1836,
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{
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"BP7",
"BS2"
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
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"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}