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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 21-32504009-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=21&pos=32504009&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "21",
"pos": 32504009,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_058187.5",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.943A>C",
"hgvs_p": "p.Ile315Leu",
"transcript": "NM_058187.5",
"protein_id": "NP_478067.2",
"transcript_support_level": null,
"aa_start": 315,
"aa_end": null,
"aa_length": 441,
"cds_start": 943,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000300255.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_058187.5"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.943A>C",
"hgvs_p": "p.Ile315Leu",
"transcript": "ENST00000300255.7",
"protein_id": "ENSP00000300255.2",
"transcript_support_level": 1,
"aa_start": 315,
"aa_end": null,
"aa_length": 441,
"cds_start": 943,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_058187.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000300255.7"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.934A>C",
"hgvs_p": "p.Ile312Leu",
"transcript": "ENST00000382699.7",
"protein_id": "ENSP00000372146.3",
"transcript_support_level": 1,
"aa_start": 312,
"aa_end": null,
"aa_length": 438,
"cds_start": 934,
"cds_end": null,
"cds_length": 1317,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000382699.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "n.*533A>C",
"hgvs_p": null,
"transcript": "ENST00000437338.5",
"protein_id": "ENSP00000389291.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000437338.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "n.*533A>C",
"hgvs_p": null,
"transcript": "ENST00000437338.5",
"protein_id": "ENSP00000389291.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000437338.5"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.943A>C",
"hgvs_p": "p.Ile315Leu",
"transcript": "ENST00000960933.1",
"protein_id": "ENSP00000630992.1",
"transcript_support_level": null,
"aa_start": 315,
"aa_end": null,
"aa_length": 441,
"cds_start": 943,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000960933.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.940A>C",
"hgvs_p": "p.Ile314Leu",
"transcript": "ENST00000898248.1",
"protein_id": "ENSP00000568307.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 440,
"cds_start": 940,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898248.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.934A>C",
"hgvs_p": "p.Ile312Leu",
"transcript": "NM_001286556.2",
"protein_id": "NP_001273485.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 438,
"cds_start": 934,
"cds_end": null,
"cds_length": 1317,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001286556.2"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.931A>C",
"hgvs_p": "p.Ile311Leu",
"transcript": "ENST00000898244.1",
"protein_id": "ENSP00000568303.1",
"transcript_support_level": null,
"aa_start": 311,
"aa_end": null,
"aa_length": 437,
"cds_start": 931,
"cds_end": null,
"cds_length": 1314,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898244.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.799A>C",
"hgvs_p": "p.Ile267Leu",
"transcript": "ENST00000401402.7",
"protein_id": "ENSP00000384594.3",
"transcript_support_level": 5,
"aa_start": 267,
"aa_end": null,
"aa_length": 393,
"cds_start": 799,
"cds_end": null,
"cds_length": 1182,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000401402.7"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.790A>C",
"hgvs_p": "p.Ile264Leu",
"transcript": "ENST00000898250.1",
"protein_id": "ENSP00000568309.1",
"transcript_support_level": null,
"aa_start": 264,
"aa_end": null,
"aa_length": 390,
"cds_start": 790,
"cds_end": null,
"cds_length": 1173,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898250.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.718A>C",
"hgvs_p": "p.Ile240Leu",
"transcript": "ENST00000898249.1",
"protein_id": "ENSP00000568308.1",
"transcript_support_level": null,
"aa_start": 240,
"aa_end": null,
"aa_length": 366,
"cds_start": 718,
"cds_end": null,
"cds_length": 1101,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898249.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.658A>C",
"hgvs_p": "p.Ile220Leu",
"transcript": "NM_001320745.2",
"protein_id": "NP_001307674.1",
"transcript_support_level": null,
"aa_start": 220,
"aa_end": null,
"aa_length": 346,
"cds_start": 658,
"cds_end": null,
"cds_length": 1041,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001320745.2"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.622A>C",
"hgvs_p": "p.Ile208Leu",
"transcript": "NM_001320744.2",
"protein_id": "NP_001307673.1",
"transcript_support_level": null,
"aa_start": 208,
"aa_end": null,
"aa_length": 334,
"cds_start": 622,
"cds_end": null,
"cds_length": 1005,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001320744.2"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.622A>C",
"hgvs_p": "p.Ile208Leu",
"transcript": "ENST00000898243.1",
"protein_id": "ENSP00000568302.1",
"transcript_support_level": null,
"aa_start": 208,
"aa_end": null,
"aa_length": 334,
"cds_start": 622,
"cds_end": null,
"cds_length": 1005,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898243.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.622A>C",
"hgvs_p": "p.Ile208Leu",
"transcript": "ENST00000960932.1",
"protein_id": "ENSP00000630991.1",
"transcript_support_level": null,
"aa_start": 208,
"aa_end": null,
"aa_length": 334,
"cds_start": 622,
"cds_end": null,
"cds_length": 1005,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000960932.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.613A>C",
"hgvs_p": "p.Ile205Leu",
"transcript": "ENST00000898245.1",
"protein_id": "ENSP00000568304.1",
"transcript_support_level": null,
"aa_start": 205,
"aa_end": null,
"aa_length": 331,
"cds_start": 613,
"cds_end": null,
"cds_length": 996,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898245.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.478A>C",
"hgvs_p": "p.Ile160Leu",
"transcript": "ENST00000898254.1",
"protein_id": "ENSP00000568313.1",
"transcript_support_level": null,
"aa_start": 160,
"aa_end": null,
"aa_length": 286,
"cds_start": 478,
"cds_end": null,
"cds_length": 861,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898254.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.469A>C",
"hgvs_p": "p.Ile157Leu",
"transcript": "ENST00000898251.1",
"protein_id": "ENSP00000568310.1",
"transcript_support_level": null,
"aa_start": 157,
"aa_end": null,
"aa_length": 283,
"cds_start": 469,
"cds_end": null,
"cds_length": 852,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000898251.1"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.940A>C",
"hgvs_p": "p.Ile314Leu",
"transcript": "XM_006724038.4",
"protein_id": "XP_006724101.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 440,
"cds_start": 940,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006724038.4"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.940A>C",
"hgvs_p": "p.Ile314Leu",
"transcript": "XM_017028418.2",
"protein_id": "XP_016883907.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 440,
"cds_start": 940,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028418.2"
},
{
"aa_ref": "I",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EVA1C",
"gene_hgnc_id": 13239,
"hgvs_c": "c.931A>C",
"hgvs_p": "p.Ile311Leu",
"transcript": "XM_047440933.1",
"protein_id": "XP_047296889.1",
"transcript_support_level": null,
"aa_start": 311,
"aa_end": null,
"aa_length": 437,
"cds_start": 931,
"cds_end": null,
"cds_length": 1314,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
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"computational_prediction_selected": "Benign",
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"splice_prediction_selected": "Benign",
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"bayesdelnoaf_prediction": "Benign",
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"phylop100way_prediction": "Benign",
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"spliceai_max_prediction": "Benign",
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"acmg_classification": "Uncertain_significance",
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"acmg_by_gene": [
{
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"BP4_Moderate"
],
"verdict": "Uncertain_significance",
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{
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"verdict": "Uncertain_significance",
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},
{
"score": 0,
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"BP4_Moderate"
],
"verdict": "Uncertain_significance",
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],
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}
],
"clinvar_disease": "",
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"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}