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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 21-38819507-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=21&pos=38819507&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 13,
"criteria": [
"BP4_Strong",
"BP7",
"BA1"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "ETS2",
"hgnc_id": 3489,
"hgvs_c": "c.1236T>G",
"hgvs_p": "p.Thr412Thr",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -13,
"transcript": "NM_001256295.2",
"verdict": "Benign"
},
{
"benign_score": 12,
"criteria": [
"BP4_Strong",
"BA1"
],
"effects": [
"intron_variant"
],
"gene_symbol": "ETS2-AS1",
"hgnc_id": 56712,
"hgvs_c": "n.535-6082A>C",
"hgvs_p": null,
"inheritance_mode": "",
"pathogenic_score": 0,
"score": -12,
"transcript": "ENST00000663561.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP7,BA1",
"acmg_score": -13,
"allele_count_reference_population": 1285857,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.81,
"chr": "21",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.8100000023841858,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3668,
"cdna_start": 1008,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_005239.6",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000360938.8",
"protein_coding": true,
"protein_id": "NP_005230.1",
"strand": true,
"transcript": "NM_005239.6",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 3668,
"cdna_start": 1008,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000360938.8",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_005239.6",
"protein_coding": true,
"protein_id": "ENSP00000354194.3",
"strand": true,
"transcript": "ENST00000360938.8",
"transcript_support_level": 1
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 609,
"aa_ref": "T",
"aa_start": 412,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4060,
"cdna_start": 1400,
"cds_end": null,
"cds_length": 1830,
"cds_start": 1236,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001256295.2",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.1236T>G",
"hgvs_p": "p.Thr412Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001243224.1",
"strand": true,
"transcript": "NM_001256295.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 504,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3788,
"cdna_start": 1042,
"cds_end": null,
"cds_length": 1515,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000667466.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000499540.1",
"strand": true,
"transcript": "ENST00000667466.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 477,
"aa_ref": "T",
"aa_start": 280,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2709,
"cdna_start": 1031,
"cds_end": null,
"cds_length": 1434,
"cds_start": 840,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000968691.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.840T>G",
"hgvs_p": "p.Thr280Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000638750.1",
"strand": true,
"transcript": "ENST00000968691.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4060,
"cdna_start": 1400,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000360214.8",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000353344.3",
"strand": true,
"transcript": "ENST00000360214.8",
"transcript_support_level": 2
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3619,
"cdna_start": 986,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000653642.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000499315.1",
"strand": true,
"transcript": "ENST00000653642.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2351,
"cdna_start": 863,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000662305.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000499226.1",
"strand": true,
"transcript": "ENST00000662305.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3713,
"cdna_start": 1072,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000666778.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000499775.1",
"strand": true,
"transcript": "ENST00000666778.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5106,
"cdna_start": 2446,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000859949.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530008.1",
"strand": true,
"transcript": "ENST00000859949.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7583,
"cdna_start": 4923,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000859950.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530009.1",
"strand": true,
"transcript": "ENST00000859950.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2630,
"cdna_start": 1481,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000859953.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530012.1",
"strand": true,
"transcript": "ENST00000859953.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
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"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3637,
"cdna_start": 977,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000859954.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530013.1",
"strand": true,
"transcript": "ENST00000859954.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4647,
"cdna_start": 1988,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000938968.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000609027.1",
"strand": true,
"transcript": "ENST00000938968.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2561,
"cdna_start": 1056,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000938970.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000609029.1",
"strand": true,
"transcript": "ENST00000938970.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4542,
"cdna_start": 1882,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000968689.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000638748.1",
"strand": true,
"transcript": "ENST00000968689.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
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"aa_length": 469,
"aa_ref": "T",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3930,
"cdna_start": 1269,
"cds_end": null,
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"cds_start": 816,
"consequences": [
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],
"exon_count": 11,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000968690.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000638749.1",
"strand": true,
"transcript": "ENST00000968690.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
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"aa_ref": "T",
"aa_start": 270,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3609,
"cdna_start": 1002,
"cds_end": null,
"cds_length": 1404,
"cds_start": 810,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000859952.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.810T>G",
"hgvs_p": "p.Thr270Thr",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530011.1",
"strand": true,
"transcript": "ENST00000859952.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
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"aa_ref": "T",
"aa_start": 268,
"biotype": "protein_coding",
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"cdna_length": 3653,
"cdna_start": 996,
"cds_end": null,
"cds_length": 1398,
"cds_start": 804,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000859951.1",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.804T>G",
"hgvs_p": "p.Thr268Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000530010.1",
"strand": true,
"transcript": "ENST00000859951.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4356,
"cdna_start": 1696,
"cds_end": null,
"cds_length": 1410,
"cds_start": 816,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "XM_005260935.2",
"gene_hgnc_id": 3489,
"gene_symbol": "ETS2",
"hgvs_c": "c.816T>G",
"hgvs_p": "p.Thr272Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_005260992.1",
"strand": true,
"transcript": "XM_005260935.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 469,
"aa_ref": "T",
"aa_start": 272,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5836,
"cdna_start": 3176,
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