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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 21-41437279-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=21&pos=41437279&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "21",
"pos": 41437279,
"ref": "A",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000398598.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_002462.5",
"protein_id": "NP_002453.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2776,
"mane_select": "ENST00000398598.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "ENST00000398598.8",
"protein_id": "ENSP00000381599.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2776,
"mane_select": "NM_002462.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "ENST00000455164.6",
"protein_id": "ENSP00000410523.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2810,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001144925.2",
"protein_id": "NP_001138397.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3427,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001178046.3",
"protein_id": "NP_001171517.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2601,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001438334.1",
"protein_id": "NP_001425263.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2910,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001438335.1",
"protein_id": "NP_001425264.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2795,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001438336.1",
"protein_id": "NP_001425265.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2677,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "NM_001438337.1",
"protein_id": "NP_001425266.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
"cds_end": null,
"cds_length": 1989,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2696,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "ENST00000398600.6",
"protein_id": "ENSP00000381601.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 662,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
"hgvs_p": null,
"transcript": "ENST00000413778.6",
"protein_id": "ENSP00000408498.2",
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},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 6,
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"gene_symbol": "MX1",
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"transcript": "ENST00000417963.6",
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},
{
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],
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"gene_symbol": "MX1",
"gene_hgnc_id": 7532,
"hgvs_c": "c.436+127A>C",
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"protein_id": "ENSP00000392151.2",
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],
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"hgvs_c": "c.436+127A>C",
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},
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],
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},
{
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],
"exon_rank": null,
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"gene_symbol": "MX1",
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},
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],
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"gene_symbol": "MX1",
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"hgvs_c": "c.436+127A>C",
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"transcript": "ENST00000679705.1",
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},
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],
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"intron_rank": 9,
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"gene_symbol": "MX1",
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],
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],
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],
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"gene_symbol": "MX1",
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"transcript": "ENST00000680347.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 7,
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"gene_symbol": "MX1",
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"hgvs_c": "c.436+127A>C",
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"transcript": "ENST00000680364.1",
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