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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-18918421-A-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=18918421&ref=A&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM5",
            "PP3_Strong"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "PRODH",
          "hgnc_id": 9453,
          "hgvs_c": "c.1322T>A",
          "hgvs_p": "p.Leu441Gln",
          "inheritance_mode": "AR",
          "pathogenic_score": 6,
          "score": 6,
          "transcript": "NM_016335.6",
          "verdict": "Likely_pathogenic"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PP3_Strong"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "ENSG00000283809",
          "hgnc_id": null,
          "hgvs_c": "c.513+7393A>T",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 4,
          "score": 4,
          "transcript": "ENST00000638240.1",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM5,PP3_Strong",
      "acmg_score": 6,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.9467,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.29,
      "chr": "22",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not provided",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.984976053237915,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "L",
          "aa_start": 441,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2203,
          "cdna_start": 1328,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 1322,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "NM_016335.6",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1322T>A",
          "hgvs_p": "p.Leu441Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000357068.11",
          "protein_coding": true,
          "protein_id": "NP_057419.5",
          "strand": false,
          "transcript": "NM_016335.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "L",
          "aa_start": 441,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2203,
          "cdna_start": 1328,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 1322,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000357068.11",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1322T>A",
          "hgvs_p": "p.Leu441Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_016335.6",
          "protein_coding": true,
          "protein_id": "ENSP00000349577.6",
          "strand": false,
          "transcript": "ENST00000357068.11",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "L",
          "aa_start": 441,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2405,
          "cdna_start": 1526,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 1322,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000610940.4",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1322T>A",
          "hgvs_p": "p.Leu441Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000480347.1",
          "strand": false,
          "transcript": "ENST00000610940.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 492,
          "aa_ref": "L",
          "aa_start": 333,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1985,
          "cdna_start": 1111,
          "cds_end": null,
          "cds_length": 1479,
          "cds_start": 998,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000334029.6",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.998T>A",
          "hgvs_p": "p.Leu333Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000334726.2",
          "strand": false,
          "transcript": "ENST00000334029.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 180,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1669,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 543,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 6,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000638240.1",
          "gene_hgnc_id": null,
          "gene_symbol": "ENSG00000283809",
          "hgvs_c": "c.513+7393A>T",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000492446.1",
          "strand": true,
          "transcript": "ENST00000638240.1",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4676,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 11,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000482858.5",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "n.3802T>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000482858.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3106,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 13,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000491604.5",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "n.2231T>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000491604.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 655,
          "aa_ref": "L",
          "aa_start": 496,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2378,
          "cdna_start": 1505,
          "cds_end": null,
          "cds_length": 1968,
          "cds_start": 1487,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000916124.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1487T>A",
          "hgvs_p": "p.Leu496Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000586183.1",
          "strand": false,
          "transcript": "ENST00000916124.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 607,
          "aa_ref": "L",
          "aa_start": 441,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2247,
          "cdna_start": 1344,
          "cds_end": null,
          "cds_length": 1824,
          "cds_start": 1322,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000881003.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1322T>A",
          "hgvs_p": "p.Leu441Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000551062.1",
          "strand": false,
          "transcript": "ENST00000881003.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 605,
          "aa_ref": "L",
          "aa_start": 439,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2218,
          "cdna_start": 1322,
          "cds_end": null,
          "cds_length": 1818,
          "cds_start": 1316,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000881004.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1316T>A",
          "hgvs_p": "p.Leu439Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000551063.1",
          "strand": false,
          "transcript": "ENST00000881004.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 598,
          "aa_ref": "L",
          "aa_start": 439,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2192,
          "cdna_start": 1319,
          "cds_end": null,
          "cds_length": 1797,
          "cds_start": 1316,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000881005.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1316T>A",
          "hgvs_p": "p.Leu439Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000551064.1",
          "strand": false,
          "transcript": "ENST00000881005.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 583,
          "aa_ref": "L",
          "aa_start": 424,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2185,
          "cdna_start": 1310,
          "cds_end": null,
          "cds_length": 1752,
          "cds_start": 1271,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000881001.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1271T>A",
          "hgvs_p": "p.Leu424Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000551060.1",
          "strand": false,
          "transcript": "ENST00000881001.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 561,
          "aa_ref": "L",
          "aa_start": 402,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2116,
          "cdna_start": 1242,
          "cds_end": null,
          "cds_length": 1686,
          "cds_start": 1205,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000881002.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1205T>A",
          "hgvs_p": "p.Leu402Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000551061.1",
          "strand": false,
          "transcript": "ENST00000881002.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 551,
          "aa_ref": "L",
          "aa_start": 392,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2055,
          "cdna_start": 1181,
          "cds_end": null,
          "cds_length": 1656,
          "cds_start": 1175,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000965629.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1175T>A",
          "hgvs_p": "p.Leu392Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000635688.1",
          "strand": false,
          "transcript": "ENST00000965629.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 546,
          "aa_ref": "L",
          "aa_start": 387,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2039,
          "cdna_start": 1165,
          "cds_end": null,
          "cds_length": 1641,
          "cds_start": 1160,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000916125.1",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.1160T>A",
          "hgvs_p": "p.Leu387Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000586184.1",
          "strand": false,
          "transcript": "ENST00000916125.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 492,
          "aa_ref": "L",
          "aa_start": 333,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2088,
          "cdna_start": 1213,
          "cds_end": null,
          "cds_length": 1479,
          "cds_start": 998,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "NM_001195226.2",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.998T>A",
          "hgvs_p": "p.Leu333Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001182155.2",
          "strand": false,
          "transcript": "NM_001195226.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 492,
          "aa_ref": "L",
          "aa_start": 333,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2048,
          "cdna_start": 1173,
          "cds_end": null,
          "cds_length": 1479,
          "cds_start": 998,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "NM_001368250.2",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.998T>A",
          "hgvs_p": "p.Leu333Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001355179.2",
          "strand": false,
          "transcript": "NM_001368250.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 492,
          "aa_ref": "L",
          "aa_start": 333,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2034,
          "cdna_start": 1159,
          "cds_end": null,
          "cds_length": 1479,
          "cds_start": 998,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000420436.5",
          "gene_hgnc_id": 9453,
          "gene_symbol": "PRODH",
          "hgvs_c": "c.998T>A",
          "hgvs_p": "p.Leu333Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000410805.1",
          "strand": false,
          "transcript": "ENST00000420436.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 484,
          "aa_ref": "L",
          "aa_start": 325,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1852,
          "cdna_start": 980,
          "cds_end": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.