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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-19196276-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=19196276&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 19196276,
"ref": "A",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000427926.6",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "NM_007098.4",
"protein_id": "NP_009029.3",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1640,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4923,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5518,
"mane_select": "ENST00000427926.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "ENST00000427926.6",
"protein_id": "ENSP00000441158.1",
"transcript_support_level": 1,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1640,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4923,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5518,
"mane_select": "NM_007098.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "ENST00000621271.4",
"protein_id": "ENSP00000485020.1",
"transcript_support_level": 1,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1583,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4752,
"cdna_start": 4225,
"cdna_end": null,
"cdna_length": 5313,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "n.4274T>C",
"hgvs_p": null,
"transcript": "ENST00000615606.4",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4994,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "n.*336T>C",
"hgvs_p": null,
"transcript": "ENST00000617103.4",
"protein_id": "ENSP00000480709.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4859,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "n.*336T>C",
"hgvs_p": null,
"transcript": "ENST00000617103.4",
"protein_id": "ENSP00000480709.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4859,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "NM_001835.4",
"protein_id": "NP_001826.3",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1583,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4752,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5347,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.650T>C",
"hgvs_p": "p.Ile217Thr",
"transcript": "ENST00000617926.4",
"protein_id": "ENSP00000481031.1",
"transcript_support_level": 2,
"aa_start": 217,
"aa_end": null,
"aa_length": 463,
"cds_start": 650,
"cds_end": null,
"cds_length": 1392,
"cdna_start": 738,
"cdna_end": null,
"cdna_length": 1695,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.650T>C",
"hgvs_p": "p.Ile217Thr",
"transcript": "ENST00000622493.4",
"protein_id": "ENSP00000479237.1",
"transcript_support_level": 2,
"aa_start": 217,
"aa_end": null,
"aa_length": 369,
"cds_start": 650,
"cds_end": null,
"cds_length": 1110,
"cdna_start": 740,
"cdna_end": null,
"cdna_length": 1714,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "XM_017028953.3",
"protein_id": "XP_016884442.1",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1632,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4899,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5494,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4067T>C",
"hgvs_p": "p.Ile1356Thr",
"transcript": "XM_017028954.3",
"protein_id": "XP_016884443.1",
"transcript_support_level": null,
"aa_start": 1356,
"aa_end": null,
"aa_length": 1602,
"cds_start": 4067,
"cds_end": null,
"cds_length": 4809,
"cdna_start": 4145,
"cdna_end": null,
"cdna_length": 5404,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4007T>C",
"hgvs_p": "p.Ile1336Thr",
"transcript": "XM_047441511.1",
"protein_id": "XP_047297467.1",
"transcript_support_level": null,
"aa_start": 1336,
"aa_end": null,
"aa_length": 1582,
"cds_start": 4007,
"cds_end": null,
"cds_length": 4749,
"cdna_start": 4085,
"cdna_end": null,
"cdna_length": 5344,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "XM_047441512.1",
"protein_id": "XP_047297468.1",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1575,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4728,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5323,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4007T>C",
"hgvs_p": "p.Ile1336Thr",
"transcript": "XM_047441513.1",
"protein_id": "XP_047297469.1",
"transcript_support_level": null,
"aa_start": 1336,
"aa_end": null,
"aa_length": 1574,
"cds_start": 4007,
"cds_end": null,
"cds_length": 4725,
"cdna_start": 4085,
"cdna_end": null,
"cdna_length": 5320,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.3965T>C",
"hgvs_p": "p.Ile1322Thr",
"transcript": "XM_017028955.3",
"protein_id": "XP_016884444.1",
"transcript_support_level": null,
"aa_start": 1322,
"aa_end": null,
"aa_length": 1568,
"cds_start": 3965,
"cds_end": null,
"cds_length": 4707,
"cdna_start": 4043,
"cdna_end": null,
"cdna_length": 5302,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "XM_017028956.3",
"protein_id": "XP_016884445.1",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1546,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4641,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 5236,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.3899T>C",
"hgvs_p": "p.Ile1300Thr",
"transcript": "XM_047441514.1",
"protein_id": "XP_047297470.1",
"transcript_support_level": null,
"aa_start": 1300,
"aa_end": null,
"aa_length": 1546,
"cds_start": 3899,
"cds_end": null,
"cds_length": 4641,
"cdna_start": 5016,
"cdna_end": null,
"cdna_length": 6275,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4067T>C",
"hgvs_p": "p.Ile1356Thr",
"transcript": "XM_047441515.1",
"protein_id": "XP_047297471.1",
"transcript_support_level": null,
"aa_start": 1356,
"aa_end": null,
"aa_length": 1545,
"cds_start": 4067,
"cds_end": null,
"cds_length": 4638,
"cdna_start": 4145,
"cdna_end": null,
"cdna_length": 5233,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4007T>C",
"hgvs_p": "p.Ile1336Thr",
"transcript": "XM_047441516.1",
"protein_id": "XP_047297472.1",
"transcript_support_level": null,
"aa_start": 1336,
"aa_end": null,
"aa_length": 1525,
"cds_start": 4007,
"cds_end": null,
"cds_length": 4578,
"cdna_start": 4085,
"cdna_end": null,
"cdna_length": 5173,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4067T>C",
"hgvs_p": "p.Ile1356Thr",
"transcript": "XM_047441517.1",
"protein_id": "XP_047297473.1",
"transcript_support_level": null,
"aa_start": 1356,
"aa_end": null,
"aa_length": 1508,
"cds_start": 4067,
"cds_end": null,
"cds_length": 4527,
"cdna_start": 4145,
"cdna_end": null,
"cdna_length": 5122,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4007T>C",
"hgvs_p": "p.Ile1336Thr",
"transcript": "XM_047441518.1",
"protein_id": "XP_047297474.1",
"transcript_support_level": null,
"aa_start": 1336,
"aa_end": null,
"aa_length": 1488,
"cds_start": 4007,
"cds_end": null,
"cds_length": 4467,
"cdna_start": 4085,
"cdna_end": null,
"cdna_length": 5062,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CLTCL1",
"gene_hgnc_id": 2093,
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr",
"transcript": "XM_047441519.1",
"protein_id": "XP_047297475.1",
"transcript_support_level": null,
"aa_start": 1394,
"aa_end": null,
"aa_length": 1467,
"cds_start": 4181,
"cds_end": null,
"cds_length": 4404,
"cdna_start": 4259,
"cdna_end": null,
"cdna_length": 4646,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
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},
{
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},
{
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},
{
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}
],
"gene_symbol": "CLTCL1",
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"hom_count_reference_population": 3694,
"allele_count_reference_population": 105695,
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"gnomad_genomes_homalt": 330,
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"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.003310650587081909,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.079,
"revel_prediction": "Benign",
"alphamissense_score": 0.102,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.49,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 4.607,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BA1",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000427926.6",
"gene_symbol": "CLTCL1",
"hgnc_id": 2093,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.4181T>C",
"hgvs_p": "p.Ile1394Thr"
},
{
"score": -13,
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"criteria": [
"BP4_Strong",
"BP6",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000658236.1",
"gene_symbol": "ENSG00000286367",
"hgnc_id": null,
"effects": [
"upstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.-126A>G",
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}
],
"clinvar_disease": "CLTCL1-related disorder",
"clinvar_classification": "Benign",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "CLTCL1-related disorder",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}