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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-20564628-C-CCAGCAGCAGCAGCAG (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=20564628&ref=C&alt=CCAGCAGCAGCAGCAG&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 20564628,
      "ref": "C",
      "alt": "CCAGCAGCAGCAGCAG",
      "effect": "disruptive_inframe_insertion",
      "transcript": "NM_001003891.3",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "NM_001003891.3",
          "protein_id": "NP_001003891.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 788,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2367,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000263205.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001003891.3"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000263205.11",
          "protein_id": "ENSP00000263205.7",
          "transcript_support_level": 1,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 788,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2367,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001003891.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000263205.11"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000292733.11",
          "protein_id": "ENSP00000292733.7",
          "transcript_support_level": 1,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000292733.11"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.564_578dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln188_Gln192dup",
          "transcript": "ENST00000406969.5",
          "protein_id": "ENSP00000384344.1",
          "transcript_support_level": 1,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 722,
          "cds_start": 579,
          "cds_end": null,
          "cds_length": 2169,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000406969.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.429_443dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln143_Gln147dup",
          "transcript": "ENST00000382974.6",
          "protein_id": "ENSP00000372434.2",
          "transcript_support_level": 1,
          "aa_start": 148,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 444,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000382974.6"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853225.1",
          "protein_id": "ENSP00000523284.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 816,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2451,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853225.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853226.1",
          "protein_id": "ENSP00000523285.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 805,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2418,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853226.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000954416.1",
          "protein_id": "ENSP00000624475.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 805,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2418,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954416.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853221.1",
          "protein_id": "ENSP00000523280.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 793,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2382,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853221.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853223.1",
          "protein_id": "ENSP00000523282.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 787,
          "cds_start": 657,
          "cds_end": null,
          "cds_length": 2364,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853223.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853215.1",
          "protein_id": "ENSP00000523274.1",
          "transcript_support_level": null,
          "aa_start": 219,
          "aa_end": null,
          "aa_length": 780,
          "cds_start": 657,
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          "biotype": "protein_coding",
          "feature": "ENST00000853215.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "QQQQQH",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000954418.1",
          "protein_id": "ENSP00000624477.1",
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          "cds_start": 657,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.612_626dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln204_Gln208dup",
          "transcript": "ENST00000912867.1",
          "protein_id": "ENSP00000582926.1",
          "transcript_support_level": null,
          "aa_start": 209,
          "aa_end": null,
          "aa_length": 778,
          "cds_start": 627,
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          "cds_length": 2337,
          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "H",
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          "strand": true,
          "consequences": [
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          ],
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
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          "biotype": "protein_coding",
          "feature": "ENST00000853217.1"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 6,
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          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853219.1",
          "protein_id": "ENSP00000523278.1",
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          "biotype": "protein_coding",
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        {
          "aa_ref": "H",
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          ],
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          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.612_626dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln204_Gln208dup",
          "transcript": "ENST00000912869.1",
          "protein_id": "ENSP00000582928.1",
          "transcript_support_level": null,
          "aa_start": 209,
          "aa_end": null,
          "aa_length": 762,
          "cds_start": 627,
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          "cds_length": 2289,
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        },
        {
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          ],
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          "intron_rank": null,
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        {
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          "gene_symbol": "MED15",
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          "transcript": "NM_015889.5",
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        },
        {
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup",
          "transcript": "ENST00000853220.1",
          "protein_id": "ENSP00000523279.1",
          "transcript_support_level": null,
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        {
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          "biotype": "protein_coding",
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        },
        {
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          "consequences": [
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
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        },
        {
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          "protein_coding": false,
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          "consequences": [
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          ],
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          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "MED15",
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          "hgvs_c": "n.*383_*384insCAGCAGCAGCAGCAG",
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          "transcript": "ENST00000444094.5",
          "protein_id": "ENSP00000409578.1",
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          "cdna_start": null,
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          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000444094.5"
        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 4,
          "intron_rank": null,
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          "gene_symbol": "MED15",
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          "hgvs_c": "n.*4_*5insCAGCAGCAGCAGCAG",
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          "transcript": "ENST00000473028.5",
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000473028.5"
        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 5,
          "intron_rank": null,
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          "gene_symbol": "MED15",
          "gene_hgnc_id": 14248,
          "hgvs_c": "n.*162_*163insCAGCAGCAGCAGCAG",
          "hgvs_p": null,
          "transcript": "ENST00000477824.5",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000477824.5"
        }
      ],
      "gene_symbol": "MED15",
      "gene_hgnc_id": 14248,
      "dbsnp": "rs374794651",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": 0,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 0,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 2.481,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -1,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP3",
      "acmg_by_gene": [
        {
          "score": -1,
          "benign_score": 1,
          "pathogenic_score": 0,
          "criteria": [
            "BP3"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_001003891.3",
          "gene_symbol": "MED15",
          "hgnc_id": 14248,
          "effects": [
            "disruptive_inframe_insertion"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.642_656dupGCAGCAGCAGCAGCA",
          "hgvs_p": "p.Gln214_Gln218dup"
        },
        {
          "score": 0,
          "benign_score": 0,
          "pathogenic_score": 0,
          "criteria": [],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000827503.1",
          "gene_symbol": "ENSG00000307622",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.612_626dupCTGCTGCTGCTGCTG",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}