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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-29268348-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=29268348&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 29268348,
"ref": "G",
"alt": "T",
"effect": "splice_region_variant,synonymous_variant",
"transcript": "NM_001438500.1",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_005243.4",
"protein_id": "NP_005234.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 656,
"cds_start": 12,
"cds_end": null,
"cds_length": 1971,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2400,
"mane_select": "ENST00000397938.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005243.4"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000397938.7",
"protein_id": "ENSP00000381031.2",
"transcript_support_level": 1,
"aa_start": 4,
"aa_end": null,
"aa_length": 656,
"cds_start": 12,
"cds_end": null,
"cds_length": 1971,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2400,
"mane_select": "NM_005243.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000397938.7"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000406548.5",
"protein_id": "ENSP00000385726.1",
"transcript_support_level": 1,
"aa_start": 4,
"aa_end": null,
"aa_length": 655,
"cds_start": 12,
"cds_end": null,
"cds_length": 1968,
"cdna_start": 76,
"cdna_end": null,
"cdna_length": 2207,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000406548.5"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000332050.10",
"protein_id": "ENSP00000330896.7",
"transcript_support_level": 1,
"aa_start": 4,
"aa_end": null,
"aa_length": 620,
"cds_start": 12,
"cds_end": null,
"cds_length": 1863,
"cdna_start": 340,
"cdna_end": null,
"cdna_length": 2552,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000332050.10"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000333395.11",
"protein_id": "ENSP00000327456.6",
"transcript_support_level": 1,
"aa_start": 4,
"aa_end": null,
"aa_length": 354,
"cds_start": 12,
"cds_end": null,
"cds_length": 1065,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 1315,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000333395.11"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "n.36G>T",
"hgvs_p": null,
"transcript": "ENST00000483415.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3231,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000483415.5"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000959983.1",
"protein_id": "ENSP00000630042.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 675,
"cds_start": 12,
"cds_end": null,
"cds_length": 2028,
"cdna_start": 56,
"cdna_end": null,
"cdna_length": 2424,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000959983.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000889504.1",
"protein_id": "ENSP00000559563.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 674,
"cds_start": 12,
"cds_end": null,
"cds_length": 2025,
"cdna_start": 25,
"cdna_end": null,
"cdna_length": 2388,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889504.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_001438500.1",
"protein_id": "NP_001425429.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 670,
"cds_start": 12,
"cds_end": null,
"cds_length": 2013,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2442,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438500.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_001438528.1",
"protein_id": "NP_001425457.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 669,
"cds_start": 12,
"cds_end": null,
"cds_length": 2010,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2439,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438528.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_001438530.1",
"protein_id": "NP_001425459.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 669,
"cds_start": 12,
"cds_end": null,
"cds_length": 2010,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2439,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438530.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000889476.1",
"protein_id": "ENSP00000559535.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 669,
"cds_start": 12,
"cds_end": null,
"cds_length": 2010,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2442,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889476.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_001438531.1",
"protein_id": "NP_001425460.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 668,
"cds_start": 12,
"cds_end": null,
"cds_length": 2007,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2436,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438531.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000889472.1",
"protein_id": "ENSP00000559531.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 668,
"cds_start": 12,
"cds_end": null,
"cds_length": 2007,
"cdna_start": 89,
"cdna_end": null,
"cdna_length": 2448,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889472.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000959986.1",
"protein_id": "ENSP00000630045.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 667,
"cds_start": 12,
"cds_end": null,
"cds_length": 2004,
"cdna_start": 17,
"cdna_end": null,
"cdna_length": 2371,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000959986.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000925322.1",
"protein_id": "ENSP00000595381.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 666,
"cds_start": 12,
"cds_end": null,
"cds_length": 2001,
"cdna_start": 56,
"cdna_end": null,
"cdna_length": 2397,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925322.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000925319.1",
"protein_id": "ENSP00000595378.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 665,
"cds_start": 12,
"cds_end": null,
"cds_length": 1998,
"cdna_start": 243,
"cdna_end": null,
"cdna_length": 2577,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925319.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000925330.1",
"protein_id": "ENSP00000595389.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 663,
"cds_start": 12,
"cds_end": null,
"cds_length": 1992,
"cdna_start": 61,
"cdna_end": null,
"cdna_length": 2214,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925330.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000889477.1",
"protein_id": "ENSP00000559536.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 662,
"cds_start": 12,
"cds_end": null,
"cds_length": 1989,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2420,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889477.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "ENST00000889509.1",
"protein_id": "ENSP00000559568.1",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 662,
"cds_start": 12,
"cds_end": null,
"cds_length": 1989,
"cdna_start": 67,
"cdna_end": null,
"cdna_length": 2217,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889509.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EWSR1",
"gene_hgnc_id": 3508,
"hgvs_c": "c.12G>T",
"hgvs_p": "p.Thr4Thr",
"transcript": "NM_013986.4",
"protein_id": "NP_053733.2",
"transcript_support_level": null,
"aa_start": 4,
"aa_end": null,
"aa_length": 661,
"cds_start": 12,
"cds_end": null,
"cds_length": 1986,
"cdna_start": 81,
"cdna_end": null,
"cdna_length": 2415,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_013986.4"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant",
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
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}
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}