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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-31619684-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=31619684&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 5,
"criteria": [
"PM2",
"BP4_Moderate",
"BP6_Moderate",
"BP7"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "PISD",
"hgnc_id": 8999,
"hgvs_c": "c.1158C>T",
"hgvs_p": "p.Ala386Ala",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": -3,
"transcript": "NM_001326411.2",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Moderate,BP6_Moderate,BP7",
"acmg_score": -3,
"allele_count_reference_population": 11,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.57,
"chr": "22",
"clinvar_classification": "Likely benign",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.032999999821186066,
"computational_source_selected": "REVEL",
"consequences": [
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 409,
"aa_ref": "A",
"aa_start": 386,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2358,
"cdna_start": 1165,
"cds_end": null,
"cds_length": 1230,
"cds_start": 1158,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001326411.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1158C>T",
"hgvs_p": "p.Ala386Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000439502.7",
"protein_coding": true,
"protein_id": "NP_001313340.1",
"strand": false,
"transcript": "NM_001326411.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 409,
"aa_ref": "A",
"aa_start": 386,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2358,
"cdna_start": 1165,
"cds_end": null,
"cds_length": 1230,
"cds_start": 1158,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000439502.7",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1158C>T",
"hgvs_p": "p.Ala386Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001326411.2",
"protein_coding": true,
"protein_id": "ENSP00000391739.2",
"strand": false,
"transcript": "ENST00000439502.7",
"transcript_support_level": 1
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2655,
"cdna_start": 1486,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000266095.9",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000266095.5",
"strand": false,
"transcript": "ENST00000266095.9",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 2534,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 7,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000460723.5",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "n.1341C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000460723.5",
"transcript_support_level": 1
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 404,
"aa_ref": "A",
"aa_start": 381,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2337,
"cdna_start": 1150,
"cds_end": null,
"cds_length": 1215,
"cds_start": 1143,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000930692.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1143C>T",
"hgvs_p": "p.Ala381Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600751.1",
"strand": false,
"transcript": "ENST00000930692.1",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 396,
"aa_ref": "A",
"aa_start": 373,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2295,
"cdna_start": 1126,
"cds_end": null,
"cds_length": 1191,
"cds_start": 1119,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000892605.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1119C>T",
"hgvs_p": "p.Ala373Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000562664.1",
"strand": false,
"transcript": "ENST00000892605.1",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 388,
"aa_ref": "A",
"aa_start": 365,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2644,
"cdna_start": 1451,
"cds_end": null,
"cds_length": 1167,
"cds_start": 1095,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001326412.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1095C>T",
"hgvs_p": "p.Ala365Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313341.1",
"strand": false,
"transcript": "NM_001326412.1",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 388,
"aa_ref": "A",
"aa_start": 365,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2444,
"cdna_start": 1251,
"cds_end": null,
"cds_length": 1167,
"cds_start": 1095,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_001326413.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1095C>T",
"hgvs_p": "p.Ala365Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313342.1",
"strand": false,
"transcript": "NM_001326413.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 388,
"aa_ref": "A",
"aa_start": 365,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2524,
"cdna_start": 1331,
"cds_end": null,
"cds_length": 1167,
"cds_start": 1095,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001326414.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1095C>T",
"hgvs_p": "p.Ala365Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313343.1",
"strand": false,
"transcript": "NM_001326414.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 388,
"aa_ref": "A",
"aa_start": 365,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2286,
"cdna_start": 1117,
"cds_end": null,
"cds_length": 1167,
"cds_start": 1095,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000892604.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1095C>T",
"hgvs_p": "p.Ala365Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000562663.1",
"strand": false,
"transcript": "ENST00000892604.1",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2698,
"cdna_start": 1505,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_001326415.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313344.1",
"strand": false,
"transcript": "NM_001326415.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2887,
"cdna_start": 1694,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 11,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "NM_001326416.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313345.1",
"strand": false,
"transcript": "NM_001326416.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2778,
"cdna_start": 1585,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "NM_001326417.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313346.1",
"strand": false,
"transcript": "NM_001326417.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2690,
"cdna_start": 1497,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "NM_014338.4",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_055153.1",
"strand": false,
"transcript": "NM_014338.4",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2608,
"cdna_start": 1415,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "NM_178022.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_821141.1",
"strand": false,
"transcript": "NM_178022.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2669,
"cdna_start": 1476,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000382151.6",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000371586.2",
"strand": false,
"transcript": "ENST00000382151.6",
"transcript_support_level": 5
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 375,
"aa_ref": "A",
"aa_start": 352,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2265,
"cdna_start": 1072,
"cds_end": null,
"cds_length": 1128,
"cds_start": 1056,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000930690.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1056C>T",
"hgvs_p": "p.Ala352Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600749.1",
"strand": false,
"transcript": "ENST00000930690.1",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 361,
"aa_ref": "A",
"aa_start": 338,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1723,
"cdna_start": 1016,
"cds_end": null,
"cds_length": 1086,
"cds_start": 1014,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000435900.5",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.1014C>T",
"hgvs_p": "p.Ala338Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000414395.1",
"strand": false,
"transcript": "ENST00000435900.5",
"transcript_support_level": 5
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 349,
"aa_ref": "A",
"aa_start": 326,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2278,
"cdna_start": 1085,
"cds_end": null,
"cds_length": 1050,
"cds_start": 978,
"consequences": [
"synonymous_variant"
],
"exon_count": 7,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "NM_001326418.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.978C>T",
"hgvs_p": "p.Ala326Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313347.1",
"strand": false,
"transcript": "NM_001326418.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 337,
"aa_ref": "A",
"aa_start": 314,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2664,
"cdna_start": 1471,
"cds_end": null,
"cds_length": 1014,
"cds_start": 942,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": 10,
"exon_rank_end": null,
"feature": "NM_001326419.2",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.942C>T",
"hgvs_p": "p.Ala314Ala",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001313348.1",
"strand": false,
"transcript": "NM_001326419.2",
"transcript_support_level": null
},
{
"aa_alt": "A",
"aa_end": null,
"aa_length": 330,
"aa_ref": "A",
"aa_start": 307,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2147,
"cdna_start": 952,
"cds_end": null,
"cds_length": 993,
"cds_start": 921,
"consequences": [
"synonymous_variant"
],
"exon_count": 7,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000930689.1",
"gene_hgnc_id": 8999,
"gene_symbol": "PISD",
"hgvs_c": "c.921C>T",
"hgvs_p": "p.Ala307Ala",
"intron_rank": null,
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]
}