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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-31837280-A-AGAG (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=31837280&ref=A&alt=AGAG&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 31837280,
      "ref": "A",
      "alt": "AGAG",
      "effect": "intron_variant",
      "transcript": "ENST00000651528.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001242896.3",
          "protein_id": "NP_001229825.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4812,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6554,
          "mane_select": "ENST00000651528.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000651528.2",
          "protein_id": "ENSP00000498382.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4812,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6554,
          "mane_select": "NM_001242896.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000382112.8",
          "protein_id": "ENSP00000371546.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4812,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5390,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 25,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2270+129_2270+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000433147.2",
          "protein_id": "ENSP00000410544.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1575,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4728,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5331,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2327+129_2327+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000400248.7",
          "protein_id": "ENSP00000383107.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1572,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4719,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5319,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285404",
          "gene_hgnc_id": null,
          "hgvs_c": "c.1786+18059_1786+18061dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000646701.1",
          "protein_id": "ENSP00000496158.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 600,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1803,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1914,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": 24,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "n.2120+129_2120+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000400246.7",
          "protein_id": "ENSP00000383105.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5725,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "n.410+129_410+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000448753.6",
          "protein_id": "ENSP00000402173.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3256,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "GD",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_insertion"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2483_2485dupGAG",
          "hgvs_p": "p.Gly828dup",
          "transcript": "ENST00000642974.1",
          "protein_id": "ENSP00000496395.1",
          "transcript_support_level": null,
          "aa_start": 829,
          "aa_end": null,
          "aa_length": 829,
          "cds_start": 2486,
          "cds_end": null,
          "cds_length": 2490,
          "cdna_start": 2645,
          "cdna_end": null,
          "cdna_length": 2682,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 1,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNU6-201P",
          "gene_hgnc_id": 47164,
          "hgvs_c": "n.47_49dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000517100.1",
          "protein_id": null,
          "transcript_support_level": 6,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 61,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": null,
          "protein_coding": null,
          "strand": true,
          "consequences": [
            "intragenic_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RNU6-201P",
          "gene_hgnc_id": 47164,
          "hgvs_c": "n.31837284_31837286dupGAG",
          "hgvs_p": null,
          "transcript": null,
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001364318.2",
          "protein_id": "NP_001351247.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1603,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4812,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6437,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2327+129_2327+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001136029.4",
          "protein_id": "NP_001129501.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1594,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4785,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6410,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 43,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2327+129_2327+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000645711.1",
          "protein_id": "ENSP00000493489.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1594,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4785,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5450,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": 25,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2378+129_2378+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000645407.1",
          "protein_id": "ENSP00000496252.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1589,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4770,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5010,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001363852.2",
          "protein_id": "NP_001350781.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1581,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4746,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5353,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001364320.2",
          "protein_id": "NP_001351249.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1581,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4746,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6488,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000400249.7",
          "protein_id": "ENSP00000383108.3",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1581,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4746,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5350,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 26,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2354+129_2354+131dupGAG",
          "hgvs_p": null,
          "transcript": "ENST00000644331.1",
          "protein_id": "ENSP00000494406.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1581,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4746,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5383,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 25,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
          "hgvs_c": "c.2270+129_2270+131dupGAG",
          "hgvs_p": null,
          "transcript": "NM_001369901.1",
          "protein_id": "NP_001356830.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1575,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4728,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5448,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": 25,
          "intron_rank_end": null,
          "gene_symbol": "DEPDC5",
          "gene_hgnc_id": 18423,
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      "allele_count_reference_population": 0,
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      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
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      "splice_score_selected": null,
      "splice_prediction_selected": null,
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      "alphamissense_score": null,
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      "bayesdelnoaf_score": null,
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      "phylop100way_score": 0.365,
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      "acmg_classification": "Uncertain_significance",
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      "acmg_by_gene": [
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          "benign_score": 0,
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          "criteria": [
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          ],
          "verdict": "Uncertain_significance",
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        },
        {
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          "criteria": [
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          ],
          "verdict": "Uncertain_significance",
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          "gene_symbol": "ENSG00000285404",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
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        },
        {
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          "benign_score": 0,
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          ],
          "verdict": "Uncertain_significance",
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          "gene_symbol": "RNU6-201P",
          "hgnc_id": 47164,
          "effects": [
            "non_coding_transcript_exon_variant"
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          "inheritance_mode": "",
          "hgvs_c": "n.47_49dupGAG",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  "message": null
}