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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-35746517-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=35746517&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 35746517,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001394114.1",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.941C>T",
          "hgvs_p": "p.Pro314Leu",
          "transcript": "ENST00000359369.8",
          "protein_id": "ENSP00000352328.4",
          "transcript_support_level": 1,
          "aa_start": 314,
          "aa_end": null,
          "aa_length": 370,
          "cds_start": 941,
          "cds_end": null,
          "cds_length": 1113,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000359369.8"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.941C>T",
          "hgvs_p": "p.Pro314Leu",
          "transcript": "ENST00000414461.6",
          "protein_id": "ENSP00000407855.2",
          "transcript_support_level": 1,
          "aa_start": 314,
          "aa_end": null,
          "aa_length": 370,
          "cds_start": 941,
          "cds_end": null,
          "cds_length": 1113,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000414461.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.932C>T",
          "hgvs_p": "p.Pro311Leu",
          "transcript": "ENST00000405409.6",
          "protein_id": "ENSP00000384944.2",
          "transcript_support_level": 1,
          "aa_start": 311,
          "aa_end": null,
          "aa_length": 367,
          "cds_start": 932,
          "cds_end": null,
          "cds_length": 1104,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405409.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1182C>T",
          "hgvs_p": "p.Thr394Thr",
          "transcript": "NM_001349999.2",
          "protein_id": "NP_001336928.2",
          "transcript_support_level": null,
          "aa_start": 394,
          "aa_end": null,
          "aa_length": 447,
          "cds_start": 1182,
          "cds_end": null,
          "cds_length": 1344,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000695854.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349999.2"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1182C>T",
          "hgvs_p": "p.Thr394Thr",
          "transcript": "ENST00000695854.1",
          "protein_id": "ENSP00000512219.1",
          "transcript_support_level": null,
          "aa_start": 394,
          "aa_end": null,
          "aa_length": 447,
          "cds_start": 1182,
          "cds_end": null,
          "cds_length": 1344,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001349999.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000695854.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1194C>T",
          "hgvs_p": "p.Thr398Thr",
          "transcript": "ENST00000438146.7",
          "protein_id": "ENSP00000413035.2",
          "transcript_support_level": 1,
          "aa_start": 398,
          "aa_end": null,
          "aa_length": 451,
          "cds_start": 1194,
          "cds_end": null,
          "cds_length": 1356,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000438146.7"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.981C>T",
          "hgvs_p": "p.Thr327Thr",
          "transcript": "ENST00000449924.6",
          "protein_id": "ENSP00000391670.2",
          "transcript_support_level": 1,
          "aa_start": 327,
          "aa_end": null,
          "aa_length": 380,
          "cds_start": 981,
          "cds_end": null,
          "cds_length": 1143,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000449924.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.969C>T",
          "hgvs_p": "p.Thr323Thr",
          "transcript": "ENST00000416721.6",
          "protein_id": "ENSP00000405651.2",
          "transcript_support_level": 1,
          "aa_start": 323,
          "aa_end": null,
          "aa_length": 376,
          "cds_start": 969,
          "cds_end": null,
          "cds_length": 1131,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000416721.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.915C>T",
          "hgvs_p": "p.Thr305Thr",
          "transcript": "ENST00000262829.11",
          "protein_id": "ENSP00000262829.7",
          "transcript_support_level": 1,
          "aa_start": 305,
          "aa_end": null,
          "aa_length": 358,
          "cds_start": 915,
          "cds_end": null,
          "cds_length": 1077,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000262829.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "n.*475C>T",
          "hgvs_p": null,
          "transcript": "ENST00000695805.1",
          "protein_id": "ENSP00000512185.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000695805.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "n.*4165C>T",
          "hgvs_p": null,
          "transcript": "ENST00000695807.1",
          "protein_id": "ENSP00000512187.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000695807.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "n.*475C>T",
          "hgvs_p": null,
          "transcript": "ENST00000695805.1",
          "protein_id": "ENSP00000512185.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000695805.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "n.*4165C>T",
          "hgvs_p": null,
          "transcript": "ENST00000695807.1",
          "protein_id": "ENSP00000512187.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000695807.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1142C>T",
          "hgvs_p": "p.Pro381Leu",
          "transcript": "NM_001394114.1",
          "protein_id": "NP_001381043.1",
          "transcript_support_level": null,
          "aa_start": 381,
          "aa_end": null,
          "aa_length": 437,
          "cds_start": 1142,
          "cds_end": null,
          "cds_length": 1314,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394114.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1139C>T",
          "hgvs_p": "p.Pro380Leu",
          "transcript": "NM_001394115.1",
          "protein_id": "NP_001381044.1",
          "transcript_support_level": null,
          "aa_start": 380,
          "aa_end": null,
          "aa_length": 436,
          "cds_start": 1139,
          "cds_end": null,
          "cds_length": 1311,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394115.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1079C>T",
          "hgvs_p": "p.Pro360Leu",
          "transcript": "NM_001349991.2",
          "protein_id": "NP_001336920.1",
          "transcript_support_level": null,
          "aa_start": 360,
          "aa_end": null,
          "aa_length": 416,
          "cds_start": 1079,
          "cds_end": null,
          "cds_length": 1251,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349991.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1067C>T",
          "hgvs_p": "p.Pro356Leu",
          "transcript": "NM_001349982.2",
          "protein_id": "NP_001336911.1",
          "transcript_support_level": null,
          "aa_start": 356,
          "aa_end": null,
          "aa_length": 412,
          "cds_start": 1067,
          "cds_end": null,
          "cds_length": 1239,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349982.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1049C>T",
          "hgvs_p": "p.Pro350Leu",
          "transcript": "ENST00000695804.1",
          "protein_id": "ENSP00000512184.1",
          "transcript_support_level": null,
          "aa_start": 350,
          "aa_end": null,
          "aa_length": 406,
          "cds_start": 1049,
          "cds_end": null,
          "cds_length": 1221,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000695804.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1046C>T",
          "hgvs_p": "p.Pro349Leu",
          "transcript": "NM_001394111.1",
          "protein_id": "NP_001381040.1",
          "transcript_support_level": null,
          "aa_start": 349,
          "aa_end": null,
          "aa_length": 405,
          "cds_start": 1046,
          "cds_end": null,
          "cds_length": 1218,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394111.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RBFOX2",
          "gene_hgnc_id": 9906,
          "hgvs_c": "c.1013C>T",
          "hgvs_p": "p.Pro338Leu",
          "transcript": "NM_001349998.2",
          "protein_id": "NP_001336927.1",
          "transcript_support_level": null,
          "aa_start": 338,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": 1013,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
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      "clinvar_submissions_summary": "LB:1",
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      "custom_annotations": null
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  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.