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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-36286823-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=36286823&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 36286823,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_002473.6",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "NM_002473.6",
          "protein_id": "NP_002464.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000216181.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002473.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000216181.11",
          "protein_id": "ENSP00000216181.6",
          "transcript_support_level": 1,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_002473.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000216181.11"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.5019C>T",
          "hgvs_p": "p.Arg1673Arg",
          "transcript": "ENST00000685801.1",
          "protein_id": "ENSP00000510688.1",
          "transcript_support_level": null,
          "aa_start": 1673,
          "aa_end": null,
          "aa_length": 1981,
          "cds_start": 5019,
          "cds_end": null,
          "cds_length": 5946,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000685801.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.5019C>T",
          "hgvs_p": "p.Arg1673Arg",
          "transcript": "ENST00000955568.1",
          "protein_id": "ENSP00000625627.1",
          "transcript_support_level": null,
          "aa_start": 1673,
          "aa_end": null,
          "aa_length": 1981,
          "cds_start": 5019,
          "cds_end": null,
          "cds_length": 5946,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000955568.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.5004C>T",
          "hgvs_p": "p.Arg1668Arg",
          "transcript": "ENST00000955563.1",
          "protein_id": "ENSP00000625622.1",
          "transcript_support_level": null,
          "aa_start": 1668,
          "aa_end": null,
          "aa_length": 1976,
          "cds_start": 5004,
          "cds_end": null,
          "cds_length": 5931,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000955563.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4995C>T",
          "hgvs_p": "p.Arg1665Arg",
          "transcript": "ENST00000859030.1",
          "protein_id": "ENSP00000529089.1",
          "transcript_support_level": null,
          "aa_start": 1665,
          "aa_end": null,
          "aa_length": 1973,
          "cds_start": 4995,
          "cds_end": null,
          "cds_length": 5922,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859030.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4992C>T",
          "hgvs_p": "p.Arg1664Arg",
          "transcript": "ENST00000955566.1",
          "protein_id": "ENSP00000625625.1",
          "transcript_support_level": null,
          "aa_start": 1664,
          "aa_end": null,
          "aa_length": 1972,
          "cds_start": 4992,
          "cds_end": null,
          "cds_length": 5919,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000955566.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859032.1",
          "protein_id": "ENSP00000529091.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859032.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859033.1",
          "protein_id": "ENSP00000529092.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859033.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859034.1",
          "protein_id": "ENSP00000529093.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859034.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859035.1",
          "protein_id": "ENSP00000529094.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 1960,
          "cds_start": 4956,
          "cds_end": null,
          "cds_length": 5883,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000859035.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859036.1",
          "protein_id": "ENSP00000529095.1",
          "transcript_support_level": null,
          "aa_start": 1652,
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          "aa_length": 1960,
          "cds_start": 4956,
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          "cds_length": 5883,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000859037.1",
          "protein_id": "ENSP00000529096.1",
          "transcript_support_level": null,
          "aa_start": 1652,
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          "aa_length": 1960,
          "cds_start": 4956,
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          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000859037.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg",
          "transcript": "ENST00000955567.1",
          "protein_id": "ENSP00000625626.1",
          "transcript_support_level": null,
          "aa_start": 1652,
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          "aa_length": 1960,
          "cds_start": 4956,
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        },
        {
          "aa_ref": "R",
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          "strand": false,
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          "intron_rank": null,
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          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4953C>T",
          "hgvs_p": "p.Arg1651Arg",
          "transcript": "ENST00000955564.1",
          "protein_id": "ENSP00000625623.1",
          "transcript_support_level": null,
          "aa_start": 1651,
          "aa_end": null,
          "aa_length": 1959,
          "cds_start": 4953,
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          "cds_length": 5880,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000955564.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4950C>T",
          "hgvs_p": "p.Arg1650Arg",
          "transcript": "ENST00000927179.1",
          "protein_id": "ENSP00000597238.1",
          "transcript_support_level": null,
          "aa_start": 1650,
          "aa_end": null,
          "aa_length": 1958,
          "cds_start": 4950,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 35,
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          "exon_count": 41,
          "intron_rank": null,
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          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.4950C>T",
          "hgvs_p": "p.Arg1650Arg",
          "transcript": "ENST00000955562.1",
          "protein_id": "ENSP00000625621.1",
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        {
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          ],
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          "gene_symbol": "MYH9",
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          "hgvs_c": "c.4956C>T",
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          "transcript": "ENST00000955565.1",
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        {
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          "gene_symbol": "MYH9",
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          "hgvs_p": "p.Arg1648Arg",
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          "protein_id": "ENSP00000529090.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000859031.1"
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "c.1938C>T",
          "hgvs_p": "p.Arg646Arg",
          "transcript": "ENST00000927178.1",
          "protein_id": "ENSP00000597237.1",
          "transcript_support_level": null,
          "aa_start": 646,
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          "cds_start": 1938,
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          "cds_length": 2865,
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          "exon_count": 7,
          "intron_rank": null,
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          "biotype": "retained_intron",
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          "protein_coding": false,
          "strand": false,
          "consequences": [
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          "exon_rank": 29,
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          "exon_count": 35,
          "intron_rank": null,
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          "gene_symbol": "MYH9",
          "gene_hgnc_id": 7579,
          "hgvs_c": "n.5251C>T",
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          "transcript": "ENST00000691109.1",
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          "cdna_start": null,
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          "biotype": "retained_intron",
          "feature": "ENST00000691109.1"
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        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 1,
          "intron_rank": null,
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          "gene_symbol": "MIR6819",
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          "hgvs_c": "n.*24C>T",
          "hgvs_p": null,
          "transcript": "ENST00000622122.1",
          "protein_id": null,
          "transcript_support_level": 6,
          "aa_start": null,
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          "cdna_start": null,
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          "biotype": "miRNA",
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        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          "exon_rank": null,
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          "exon_count": 1,
          "intron_rank": null,
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          "gene_symbol": "MIR6819",
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          "hgvs_c": "n.*24C>T",
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          "transcript": "NR_106877.1",
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          "biotype": "pseudogene",
          "feature": "NR_106877.1"
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        {
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          "protein_coding": false,
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 1,
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          "gene_symbol": "MIR6819",
          "gene_hgnc_id": 50155,
          "hgvs_c": "n.*24C>T",
          "hgvs_p": null,
          "transcript": "unassigned_transcript_3662",
          "protein_id": null,
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          "biotype": "miRNA",
          "feature": "unassigned_transcript_3662"
        },
        {
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          "protein_coding": false,
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          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 1,
          "intron_rank": null,
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          "gene_symbol": "MIR6819",
          "gene_hgnc_id": 50155,
          "hgvs_c": "n.*58C>T",
          "hgvs_p": null,
          "transcript": "unassigned_transcript_3663",
          "protein_id": null,
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          "cdna_length": null,
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          "biotype": "miRNA",
          "feature": "unassigned_transcript_3663"
        }
      ],
      "gene_symbol": "MYH9",
      "gene_hgnc_id": 7579,
      "dbsnp": "rs148632964",
      "frequency_reference_population": 0.00023291752,
      "hom_count_reference_population": 5,
      "allele_count_reference_population": 375,
      "gnomad_exomes_af": 0.000234617,
      "gnomad_genomes_af": 0.000216649,
      "gnomad_exomes_ac": 342,
      "gnomad_genomes_ac": 33,
      "gnomad_exomes_homalt": 5,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.46000000834465027,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0.019999999552965164,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.46,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -3.75,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.02,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -19,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Moderate,BP6_Very_Strong,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -19,
          "benign_score": 19,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Moderate",
            "BP6_Very_Strong",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_002473.6",
          "gene_symbol": "MYH9",
          "hgnc_id": 7579,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.4956C>T",
          "hgvs_p": "p.Arg1652Arg"
        },
        {
          "score": -14,
          "benign_score": 14,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Moderate",
            "BP6_Very_Strong",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NR_106877.1",
          "gene_symbol": "MIR6819",
          "hgnc_id": 50155,
          "effects": [
            "downstream_gene_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.*24C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Autosomal dominant nonsyndromic hearing loss 17,MYH9-related disorder,not provided,not specified",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:4 B:2",
      "phenotype_combined": "not specified|not provided|MYH9-related disorder|Autosomal dominant nonsyndromic hearing loss 17",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}