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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-38738951-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=38738951&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 38738951,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_001394427.1",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1701C>T",
          "hgvs_p": "p.Tyr567Tyr",
          "transcript": "NM_015374.3",
          "protein_id": "NP_056189.1",
          "transcript_support_level": null,
          "aa_start": 567,
          "aa_end": null,
          "aa_length": 717,
          "cds_start": 1701,
          "cds_end": null,
          "cds_length": 2154,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000689035.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015374.3"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1701C>T",
          "hgvs_p": "p.Tyr567Tyr",
          "transcript": "ENST00000689035.1",
          "protein_id": "ENSP00000508608.1",
          "transcript_support_level": null,
          "aa_start": 567,
          "aa_end": null,
          "aa_length": 717,
          "cds_start": 1701,
          "cds_end": null,
          "cds_length": 2154,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_015374.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000689035.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1764C>T",
          "hgvs_p": "p.Tyr588Tyr",
          "transcript": "ENST00000405018.5",
          "protein_id": "ENSP00000385616.1",
          "transcript_support_level": 1,
          "aa_start": 588,
          "aa_end": null,
          "aa_length": 738,
          "cds_start": 1764,
          "cds_end": null,
          "cds_length": 2217,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405018.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1701C>T",
          "hgvs_p": "p.Tyr567Tyr",
          "transcript": "ENST00000405510.5",
          "protein_id": "ENSP00000385740.1",
          "transcript_support_level": 1,
          "aa_start": 567,
          "aa_end": null,
          "aa_length": 717,
          "cds_start": 1701,
          "cds_end": null,
          "cds_length": 2154,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405510.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1797C>T",
          "hgvs_p": "p.Tyr599Tyr",
          "transcript": "ENST00000956730.1",
          "protein_id": "ENSP00000626789.1",
          "transcript_support_level": null,
          "aa_start": 599,
          "aa_end": null,
          "aa_length": 749,
          "cds_start": 1797,
          "cds_end": null,
          "cds_length": 2250,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956730.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1797C>T",
          "hgvs_p": "p.Tyr599Tyr",
          "transcript": "ENST00000956735.1",
          "protein_id": "ENSP00000626794.1",
          "transcript_support_level": null,
          "aa_start": 599,
          "aa_end": null,
          "aa_length": 749,
          "cds_start": 1797,
          "cds_end": null,
          "cds_length": 2250,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956735.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1797C>T",
          "hgvs_p": "p.Tyr599Tyr",
          "transcript": "ENST00000956751.1",
          "protein_id": "ENSP00000626810.1",
          "transcript_support_level": null,
          "aa_start": 599,
          "aa_end": null,
          "aa_length": 749,
          "cds_start": 1797,
          "cds_end": null,
          "cds_length": 2250,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956751.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1794C>T",
          "hgvs_p": "p.Tyr598Tyr",
          "transcript": "NM_001394427.1",
          "protein_id": "NP_001381356.1",
          "transcript_support_level": null,
          "aa_start": 598,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": 1794,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394427.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1794C>T",
          "hgvs_p": "p.Tyr598Tyr",
          "transcript": "ENST00000956736.1",
          "protein_id": "ENSP00000626795.1",
          "transcript_support_level": null,
          "aa_start": 598,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": 1794,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956736.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1767C>T",
          "hgvs_p": "p.Tyr589Tyr",
          "transcript": "ENST00000956744.1",
          "protein_id": "ENSP00000626803.1",
          "transcript_support_level": null,
          "aa_start": 589,
          "aa_end": null,
          "aa_length": 739,
          "cds_start": 1767,
          "cds_end": null,
          "cds_length": 2220,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956744.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1764C>T",
          "hgvs_p": "p.Tyr588Tyr",
          "transcript": "NM_001199579.2",
          "protein_id": "NP_001186508.1",
          "transcript_support_level": null,
          "aa_start": 588,
          "aa_end": null,
          "aa_length": 738,
          "cds_start": 1764,
          "cds_end": null,
          "cds_length": 2217,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001199579.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1764C>T",
          "hgvs_p": "p.Tyr588Tyr",
          "transcript": "NM_001394428.1",
          "protein_id": "NP_001381357.1",
          "transcript_support_level": null,
          "aa_start": 588,
          "aa_end": null,
          "aa_length": 738,
          "cds_start": 1764,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001394428.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1764C>T",
          "hgvs_p": "p.Tyr588Tyr",
          "transcript": "ENST00000956739.1",
          "protein_id": "ENSP00000626798.1",
          "transcript_support_level": null,
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          "cds_start": 1764,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956739.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1761C>T",
          "hgvs_p": "p.Tyr587Tyr",
          "transcript": "ENST00000870844.1",
          "protein_id": "ENSP00000540903.1",
          "transcript_support_level": null,
          "aa_start": 587,
          "aa_end": null,
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        {
          "aa_ref": "Y",
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          "strand": false,
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          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
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          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1761C>T",
          "hgvs_p": "p.Tyr587Tyr",
          "transcript": "ENST00000870850.1",
          "protein_id": "ENSP00000540909.1",
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          "aa_end": null,
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          "cds_start": 1761,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000870850.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
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          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1761C>T",
          "hgvs_p": "p.Tyr587Tyr",
          "transcript": "ENST00000956749.1",
          "protein_id": "ENSP00000626808.1",
          "transcript_support_level": null,
          "aa_start": 587,
          "aa_end": null,
          "aa_length": 737,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1746C>T",
          "hgvs_p": "p.Tyr582Tyr",
          "transcript": "NM_001394429.1",
          "protein_id": "NP_001381358.1",
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        {
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          "strand": false,
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          "intron_rank": null,
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          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1746C>T",
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          "transcript": "NM_001394430.1",
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        },
        {
          "aa_ref": "Y",
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 15,
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          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1746C>T",
          "hgvs_p": "p.Tyr582Tyr",
          "transcript": "ENST00000956732.1",
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          "aa_start": 582,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956732.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN2",
          "gene_hgnc_id": 14210,
          "hgvs_c": "c.1746C>T",
          "hgvs_p": "p.Tyr582Tyr",
          "transcript": "ENST00000956737.1",
          "protein_id": "ENSP00000626796.1",
          "transcript_support_level": null,
          "aa_start": 582,
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            "BS1",
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            "BS1",
            "BS2"
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          "verdict": "Benign",
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          "effects": [
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        {
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            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000416406.1",
          "gene_symbol": "ENSG00000225450",
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          "effects": [
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          "inheritance_mode": "",
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        {
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            "BS2"
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          "gene_symbol": "ENSG00000244491",
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          "inheritance_mode": "",
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      "clinvar_disease": "Emery-Dreifuss muscular dystrophy,not provided",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "B:2",
      "phenotype_combined": "Emery-Dreifuss muscular dystrophy|not provided",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}