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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-41230150-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=41230150&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 41230150,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_031488.5",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2017C>T",
"hgvs_p": "p.Arg673Cys",
"transcript": "NM_031488.5",
"protein_id": "NP_113676.2",
"transcript_support_level": null,
"aa_start": 673,
"aa_end": null,
"aa_length": 705,
"cds_start": 2017,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000216237.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_031488.5"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2017C>T",
"hgvs_p": "p.Arg673Cys",
"transcript": "ENST00000216237.10",
"protein_id": "ENSP00000216237.5",
"transcript_support_level": 1,
"aa_start": 673,
"aa_end": null,
"aa_length": 705,
"cds_start": 2017,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_031488.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000216237.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2263-420G>A",
"hgvs_p": null,
"transcript": "NM_138481.2",
"protein_id": "NP_612490.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 762,
"cds_start": null,
"cds_end": null,
"cds_length": 2289,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000216241.14",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138481.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2263-420G>A",
"hgvs_p": null,
"transcript": "ENST00000216241.14",
"protein_id": "ENSP00000216241.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 762,
"cds_start": null,
"cds_end": null,
"cds_length": 2289,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_138481.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000216241.14"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.2551C>T",
"hgvs_p": null,
"transcript": "ENST00000466589.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000466589.5"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2119C>T",
"hgvs_p": "p.Arg707Cys",
"transcript": "ENST00000892682.1",
"protein_id": "ENSP00000562741.1",
"transcript_support_level": null,
"aa_start": 707,
"aa_end": null,
"aa_length": 739,
"cds_start": 2119,
"cds_end": null,
"cds_length": 2220,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892682.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2041C>T",
"hgvs_p": "p.Arg681Cys",
"transcript": "ENST00000969172.1",
"protein_id": "ENSP00000639231.1",
"transcript_support_level": null,
"aa_start": 681,
"aa_end": null,
"aa_length": 713,
"cds_start": 2041,
"cds_end": null,
"cds_length": 2142,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969172.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2029C>T",
"hgvs_p": "p.Arg677Cys",
"transcript": "ENST00000922934.1",
"protein_id": "ENSP00000592993.1",
"transcript_support_level": null,
"aa_start": 677,
"aa_end": null,
"aa_length": 709,
"cds_start": 2029,
"cds_end": null,
"cds_length": 2130,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922934.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2014C>T",
"hgvs_p": "p.Arg672Cys",
"transcript": "ENST00000969169.1",
"protein_id": "ENSP00000639228.1",
"transcript_support_level": null,
"aa_start": 672,
"aa_end": null,
"aa_length": 704,
"cds_start": 2014,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969169.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1978C>T",
"hgvs_p": "p.Arg660Cys",
"transcript": "ENST00000969170.1",
"protein_id": "ENSP00000639229.1",
"transcript_support_level": null,
"aa_start": 660,
"aa_end": null,
"aa_length": 692,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2079,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969170.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1912C>T",
"hgvs_p": "p.Arg638Cys",
"transcript": "ENST00000969168.1",
"protein_id": "ENSP00000639227.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 670,
"cds_start": 1912,
"cds_end": null,
"cds_length": 2013,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969168.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1900C>T",
"hgvs_p": "p.Arg634Cys",
"transcript": "ENST00000892680.1",
"protein_id": "ENSP00000562739.1",
"transcript_support_level": null,
"aa_start": 634,
"aa_end": null,
"aa_length": 666,
"cds_start": 1900,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892680.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1837C>T",
"hgvs_p": "p.Arg613Cys",
"transcript": "ENST00000922932.1",
"protein_id": "ENSP00000592991.1",
"transcript_support_level": null,
"aa_start": 613,
"aa_end": null,
"aa_length": 645,
"cds_start": 1837,
"cds_end": null,
"cds_length": 1938,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922932.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1813C>T",
"hgvs_p": "p.Arg605Cys",
"transcript": "ENST00000922933.1",
"protein_id": "ENSP00000592992.1",
"transcript_support_level": null,
"aa_start": 605,
"aa_end": null,
"aa_length": 637,
"cds_start": 1813,
"cds_end": null,
"cds_length": 1914,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922933.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1765C>T",
"hgvs_p": "p.Arg589Cys",
"transcript": "ENST00000892681.1",
"protein_id": "ENSP00000562740.1",
"transcript_support_level": null,
"aa_start": 589,
"aa_end": null,
"aa_length": 621,
"cds_start": 1765,
"cds_end": null,
"cds_length": 1866,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892681.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1648C>T",
"hgvs_p": "p.Arg550Cys",
"transcript": "ENST00000969171.1",
"protein_id": "ENSP00000639230.1",
"transcript_support_level": null,
"aa_start": 550,
"aa_end": null,
"aa_length": 582,
"cds_start": 1648,
"cds_end": null,
"cds_length": 1749,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969171.1"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1765C>T",
"hgvs_p": "p.Arg589Cys",
"transcript": "XM_017028976.2",
"protein_id": "XP_016884465.1",
"transcript_support_level": null,
"aa_start": 589,
"aa_end": null,
"aa_length": 621,
"cds_start": 1765,
"cds_end": null,
"cds_length": 1866,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028976.2"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1687C>T",
"hgvs_p": "p.Arg563Cys",
"transcript": "XM_017028977.2",
"protein_id": "XP_016884466.1",
"transcript_support_level": null,
"aa_start": 563,
"aa_end": null,
"aa_length": 595,
"cds_start": 1687,
"cds_end": null,
"cds_length": 1788,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028977.2"
},
{
"aa_ref": "R",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1387C>T",
"hgvs_p": "p.Arg463Cys",
"transcript": "XM_047441537.1",
"protein_id": "XP_047297493.1",
"transcript_support_level": null,
"aa_start": 463,
"aa_end": null,
"aa_length": 495,
"cds_start": 1387,
"cds_end": null,
"cds_length": 1488,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047441537.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2242-420G>A",
"hgvs_p": null,
"transcript": "ENST00000892871.1",
"protein_id": "ENSP00000562930.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 755,
"cds_start": null,
"cds_end": null,
"cds_length": 2268,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892871.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2026-420G>A",
"hgvs_p": null,
"transcript": "ENST00000417999.5",
"protein_id": "ENSP00000392046.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 683,
"cds_start": null,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000417999.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.862-420G>A",
"hgvs_p": null,
"transcript": "ENST00000892870.1",
"protein_id": "ENSP00000562929.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 295,
"cds_start": null,
"cds_end": null,
"cds_length": 888,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892870.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.*277C>T",
"hgvs_p": null,
"transcript": "ENST00000452106.5",
"protein_id": "ENSP00000414423.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000452106.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.4755C>T",
"hgvs_p": null,
"transcript": "ENST00000479978.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000479978.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.*277C>T",
"hgvs_p": null,
"transcript": "ENST00000452106.5",
"protein_id": "ENSP00000414423.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000452106.5"
}
],
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"dbsnp": "rs954517657",
"frequency_reference_population": 0.0000072481857,
"hom_count_reference_population": 0,
"allele_count_reference_population": 9,
"gnomad_exomes_af": 0.0000045256,
"gnomad_genomes_af": 0.0000292261,
"gnomad_exomes_ac": 5,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.07208061218261719,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.20000000298023224,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.034,
"revel_prediction": "Benign",
"alphamissense_score": 0.0994,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.59,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.122,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.2,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_031488.5",
"gene_symbol": "L3MBTL2",
"hgnc_id": 18594,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2017C>T",
"hgvs_p": "p.Arg673Cys"
},
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_138481.2",
"gene_symbol": "CHADL",
"hgnc_id": 25165,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.2263-420G>A",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}