← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-41230182-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=41230182&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 41230182,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_031488.5",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2049G>A",
"hgvs_p": "p.Ser683Ser",
"transcript": "NM_031488.5",
"protein_id": "NP_113676.2",
"transcript_support_level": null,
"aa_start": 683,
"aa_end": null,
"aa_length": 705,
"cds_start": 2049,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000216237.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_031488.5"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2049G>A",
"hgvs_p": "p.Ser683Ser",
"transcript": "ENST00000216237.10",
"protein_id": "ENSP00000216237.5",
"transcript_support_level": 1,
"aa_start": 683,
"aa_end": null,
"aa_length": 705,
"cds_start": 2049,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_031488.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000216237.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2263-452C>T",
"hgvs_p": null,
"transcript": "NM_138481.2",
"protein_id": "NP_612490.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 762,
"cds_start": null,
"cds_end": null,
"cds_length": 2289,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000216241.14",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138481.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2263-452C>T",
"hgvs_p": null,
"transcript": "ENST00000216241.14",
"protein_id": "ENSP00000216241.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 762,
"cds_start": null,
"cds_end": null,
"cds_length": 2289,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_138481.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000216241.14"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.2583G>A",
"hgvs_p": null,
"transcript": "ENST00000466589.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000466589.5"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2151G>A",
"hgvs_p": "p.Ser717Ser",
"transcript": "ENST00000892682.1",
"protein_id": "ENSP00000562741.1",
"transcript_support_level": null,
"aa_start": 717,
"aa_end": null,
"aa_length": 739,
"cds_start": 2151,
"cds_end": null,
"cds_length": 2220,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892682.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2073G>A",
"hgvs_p": "p.Ser691Ser",
"transcript": "ENST00000969172.1",
"protein_id": "ENSP00000639231.1",
"transcript_support_level": null,
"aa_start": 691,
"aa_end": null,
"aa_length": 713,
"cds_start": 2073,
"cds_end": null,
"cds_length": 2142,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969172.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2061G>A",
"hgvs_p": "p.Ser687Ser",
"transcript": "ENST00000922934.1",
"protein_id": "ENSP00000592993.1",
"transcript_support_level": null,
"aa_start": 687,
"aa_end": null,
"aa_length": 709,
"cds_start": 2061,
"cds_end": null,
"cds_length": 2130,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922934.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2046G>A",
"hgvs_p": "p.Ser682Ser",
"transcript": "ENST00000969169.1",
"protein_id": "ENSP00000639228.1",
"transcript_support_level": null,
"aa_start": 682,
"aa_end": null,
"aa_length": 704,
"cds_start": 2046,
"cds_end": null,
"cds_length": 2115,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969169.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.2010G>A",
"hgvs_p": "p.Ser670Ser",
"transcript": "ENST00000969170.1",
"protein_id": "ENSP00000639229.1",
"transcript_support_level": null,
"aa_start": 670,
"aa_end": null,
"aa_length": 692,
"cds_start": 2010,
"cds_end": null,
"cds_length": 2079,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969170.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1944G>A",
"hgvs_p": "p.Ser648Ser",
"transcript": "ENST00000969168.1",
"protein_id": "ENSP00000639227.1",
"transcript_support_level": null,
"aa_start": 648,
"aa_end": null,
"aa_length": 670,
"cds_start": 1944,
"cds_end": null,
"cds_length": 2013,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969168.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1932G>A",
"hgvs_p": "p.Ser644Ser",
"transcript": "ENST00000892680.1",
"protein_id": "ENSP00000562739.1",
"transcript_support_level": null,
"aa_start": 644,
"aa_end": null,
"aa_length": 666,
"cds_start": 1932,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892680.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1869G>A",
"hgvs_p": "p.Ser623Ser",
"transcript": "ENST00000922932.1",
"protein_id": "ENSP00000592991.1",
"transcript_support_level": null,
"aa_start": 623,
"aa_end": null,
"aa_length": 645,
"cds_start": 1869,
"cds_end": null,
"cds_length": 1938,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922932.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1845G>A",
"hgvs_p": "p.Ser615Ser",
"transcript": "ENST00000922933.1",
"protein_id": "ENSP00000592992.1",
"transcript_support_level": null,
"aa_start": 615,
"aa_end": null,
"aa_length": 637,
"cds_start": 1845,
"cds_end": null,
"cds_length": 1914,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922933.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1797G>A",
"hgvs_p": "p.Ser599Ser",
"transcript": "ENST00000892681.1",
"protein_id": "ENSP00000562740.1",
"transcript_support_level": null,
"aa_start": 599,
"aa_end": null,
"aa_length": 621,
"cds_start": 1797,
"cds_end": null,
"cds_length": 1866,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892681.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1680G>A",
"hgvs_p": "p.Ser560Ser",
"transcript": "ENST00000969171.1",
"protein_id": "ENSP00000639230.1",
"transcript_support_level": null,
"aa_start": 560,
"aa_end": null,
"aa_length": 582,
"cds_start": 1680,
"cds_end": null,
"cds_length": 1749,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000969171.1"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1797G>A",
"hgvs_p": "p.Ser599Ser",
"transcript": "XM_017028976.2",
"protein_id": "XP_016884465.1",
"transcript_support_level": null,
"aa_start": 599,
"aa_end": null,
"aa_length": 621,
"cds_start": 1797,
"cds_end": null,
"cds_length": 1866,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028976.2"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1719G>A",
"hgvs_p": "p.Ser573Ser",
"transcript": "XM_017028977.2",
"protein_id": "XP_016884466.1",
"transcript_support_level": null,
"aa_start": 573,
"aa_end": null,
"aa_length": 595,
"cds_start": 1719,
"cds_end": null,
"cds_length": 1788,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028977.2"
},
{
"aa_ref": "S",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "c.1419G>A",
"hgvs_p": "p.Ser473Ser",
"transcript": "XM_047441537.1",
"protein_id": "XP_047297493.1",
"transcript_support_level": null,
"aa_start": 473,
"aa_end": null,
"aa_length": 495,
"cds_start": 1419,
"cds_end": null,
"cds_length": 1488,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047441537.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2242-452C>T",
"hgvs_p": null,
"transcript": "ENST00000892871.1",
"protein_id": "ENSP00000562930.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 755,
"cds_start": null,
"cds_end": null,
"cds_length": 2268,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892871.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.2026-452C>T",
"hgvs_p": null,
"transcript": "ENST00000417999.5",
"protein_id": "ENSP00000392046.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 683,
"cds_start": null,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000417999.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "CHADL",
"gene_hgnc_id": 25165,
"hgvs_c": "c.862-452C>T",
"hgvs_p": null,
"transcript": "ENST00000892870.1",
"protein_id": "ENSP00000562929.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 295,
"cds_start": null,
"cds_end": null,
"cds_length": 888,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892870.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.*309G>A",
"hgvs_p": null,
"transcript": "ENST00000452106.5",
"protein_id": "ENSP00000414423.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000452106.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.4787G>A",
"hgvs_p": null,
"transcript": "ENST00000479978.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000479978.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"hgvs_c": "n.*309G>A",
"hgvs_p": null,
"transcript": "ENST00000452106.5",
"protein_id": "ENSP00000414423.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000452106.5"
}
],
"gene_symbol": "L3MBTL2",
"gene_hgnc_id": 18594,
"dbsnp": "rs199544355",
"frequency_reference_population": 0.00031554775,
"hom_count_reference_population": 0,
"allele_count_reference_population": 498,
"gnomad_exomes_af": 0.000319932,
"gnomad_genomes_af": 0.000272755,
"gnomad_exomes_ac": 458,
"gnomad_genomes_ac": 40,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8899999856948853,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.4000000059604645,
"splice_prediction_selected": "Uncertain_significance",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.89,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -2.439,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.4,
"spliceai_max_prediction": "Uncertain_significance",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP6",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP6"
],
"verdict": "Likely_benign",
"transcript": "NM_031488.5",
"gene_symbol": "L3MBTL2",
"hgnc_id": 18594,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2049G>A",
"hgvs_p": "p.Ser683Ser"
},
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP6"
],
"verdict": "Likely_benign",
"transcript": "NM_138481.2",
"gene_symbol": "CHADL",
"hgnc_id": 25165,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.2263-452C>T",
"hgvs_p": null
}
],
"clinvar_disease": "EBV-positive nodal T- and NK-cell lymphoma",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "EBV-positive nodal T- and NK-cell lymphoma",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}