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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-43537477-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=43537477&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 43537477,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_022785.4",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "NM_022785.4",
"protein_id": "NP_073622.2",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1501,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000262726.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_022785.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "ENST00000262726.12",
"protein_id": "ENSP00000262726.7",
"transcript_support_level": 2,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1501,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_022785.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262726.12"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3492G>C",
"hgvs_p": "p.Arg1164Ser",
"transcript": "ENST00000396231.6",
"protein_id": "ENSP00000379533.2",
"transcript_support_level": 1,
"aa_start": 1164,
"aa_end": null,
"aa_length": 1349,
"cds_start": 3492,
"cds_end": null,
"cds_length": 4050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000396231.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "n.585G>C",
"hgvs_p": null,
"transcript": "ENST00000461800.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000461800.5"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "ENST00000970826.1",
"protein_id": "ENSP00000640885.1",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1587,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970826.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "ENST00000970827.1",
"protein_id": "ENSP00000640886.1",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1501,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970827.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3492G>C",
"hgvs_p": "p.Arg1164Ser",
"transcript": "NM_198856.3",
"protein_id": "NP_942153.1",
"transcript_support_level": null,
"aa_start": 1164,
"aa_end": null,
"aa_length": 1349,
"cds_start": 3492,
"cds_end": null,
"cds_length": 4050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_198856.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.4026G>C",
"hgvs_p": "p.Arg1342Ser",
"transcript": "XM_011530316.2",
"protein_id": "XP_011528618.1",
"transcript_support_level": null,
"aa_start": 1342,
"aa_end": null,
"aa_length": 1613,
"cds_start": 4026,
"cds_end": null,
"cds_length": 4842,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530316.2"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.4026G>C",
"hgvs_p": "p.Arg1342Ser",
"transcript": "XM_017028910.3",
"protein_id": "XP_016884399.1",
"transcript_support_level": null,
"aa_start": 1342,
"aa_end": null,
"aa_length": 1613,
"cds_start": 4026,
"cds_end": null,
"cds_length": 4842,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028910.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 29,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "XM_005261704.3",
"protein_id": "XP_005261761.1",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1587,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005261704.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3948G>C",
"hgvs_p": "p.Arg1316Ser",
"transcript": "XM_011530317.4",
"protein_id": "XP_011528619.1",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1587,
"cds_start": 3948,
"cds_end": null,
"cds_length": 4764,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530317.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3870G>C",
"hgvs_p": "p.Arg1290Ser",
"transcript": "XM_011530318.4",
"protein_id": "XP_011528620.1",
"transcript_support_level": null,
"aa_start": 1290,
"aa_end": null,
"aa_length": 1561,
"cds_start": 3870,
"cds_end": null,
"cds_length": 4686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530318.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.4026G>C",
"hgvs_p": "p.Arg1342Ser",
"transcript": "XM_017028911.3",
"protein_id": "XP_016884400.1",
"transcript_support_level": null,
"aa_start": 1342,
"aa_end": null,
"aa_length": 1527,
"cds_start": 4026,
"cds_end": null,
"cds_length": 4584,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017028911.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3630G>C",
"hgvs_p": "p.Arg1210Ser",
"transcript": "XM_011530319.4",
"protein_id": "XP_011528621.1",
"transcript_support_level": null,
"aa_start": 1210,
"aa_end": null,
"aa_length": 1481,
"cds_start": 3630,
"cds_end": null,
"cds_length": 4446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530319.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 30,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.4026G>C",
"hgvs_p": "p.Arg1342Ser",
"transcript": "XM_011530320.4",
"protein_id": "XP_011528622.1",
"transcript_support_level": null,
"aa_start": 1342,
"aa_end": null,
"aa_length": 1478,
"cds_start": 4026,
"cds_end": null,
"cds_length": 4437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530320.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3492G>C",
"hgvs_p": "p.Arg1164Ser",
"transcript": "XM_011530321.4",
"protein_id": "XP_011528623.1",
"transcript_support_level": null,
"aa_start": 1164,
"aa_end": null,
"aa_length": 1435,
"cds_start": 3492,
"cds_end": null,
"cds_length": 4308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530321.4"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3492G>C",
"hgvs_p": "p.Arg1164Ser",
"transcript": "XM_047441461.1",
"protein_id": "XP_047297417.1",
"transcript_support_level": null,
"aa_start": 1164,
"aa_end": null,
"aa_length": 1435,
"cds_start": 3492,
"cds_end": null,
"cds_length": 4308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047441461.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3486G>C",
"hgvs_p": "p.Arg1162Ser",
"transcript": "XM_011530323.3",
"protein_id": "XP_011528625.1",
"transcript_support_level": null,
"aa_start": 1162,
"aa_end": null,
"aa_length": 1433,
"cds_start": 3486,
"cds_end": null,
"cds_length": 4302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530323.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3474G>C",
"hgvs_p": "p.Arg1158Ser",
"transcript": "XM_047441462.1",
"protein_id": "XP_047297418.1",
"transcript_support_level": null,
"aa_start": 1158,
"aa_end": null,
"aa_length": 1429,
"cds_start": 3474,
"cds_end": null,
"cds_length": 4290,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047441462.1"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3204G>C",
"hgvs_p": "p.Arg1068Ser",
"transcript": "XM_011530325.3",
"protein_id": "XP_011528627.1",
"transcript_support_level": null,
"aa_start": 1068,
"aa_end": null,
"aa_length": 1339,
"cds_start": 3204,
"cds_end": null,
"cds_length": 4020,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530325.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.3024G>C",
"hgvs_p": "p.Arg1008Ser",
"transcript": "XM_011530327.3",
"protein_id": "XP_011528629.1",
"transcript_support_level": null,
"aa_start": 1008,
"aa_end": null,
"aa_length": 1279,
"cds_start": 3024,
"cds_end": null,
"cds_length": 3840,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011530327.3"
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EFCAB6",
"gene_hgnc_id": 24204,
"hgvs_c": "c.1842G>C",
"hgvs_p": "p.Arg614Ser",
"transcript": "XM_047441464.1",
"protein_id": "XP_047297420.1",
"transcript_support_level": null,
"aa_start": 614,
"aa_end": null,
"aa_length": 885,
"cds_start": 1842,
"cds_end": null,
"cds_length": 2658,
"cdna_start": null,
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{
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{
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{
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],
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],
"gene_symbol": "EFCAB6",
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"hom_count_reference_population": 0,
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"computational_score_selected": 0.2980586290359497,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.072,
"revel_prediction": "Benign",
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"bayesdelnoaf_score": -0.56,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.85,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
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"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
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"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
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"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "NM_022785.4",
"gene_symbol": "EFCAB6",
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"effects": [
"missense_variant"
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"inheritance_mode": "AR",
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"hgvs_p": "p.Arg1316Ser"
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{
"score": 1,
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"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
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"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
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}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}