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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 22-44119062-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=44119062&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "22",
"pos": 44119062,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000338758.12",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.298G>T",
"hgvs_p": "p.Val100Leu",
"transcript": "NM_013327.5",
"protein_id": "NP_037459.2",
"transcript_support_level": null,
"aa_start": 100,
"aa_end": null,
"aa_length": 364,
"cds_start": 298,
"cds_end": null,
"cds_length": 1095,
"cdna_start": 336,
"cdna_end": null,
"cdna_length": 5394,
"mane_select": "ENST00000338758.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.298G>T",
"hgvs_p": "p.Val100Leu",
"transcript": "ENST00000338758.12",
"protein_id": "ENSP00000342492.6",
"transcript_support_level": 1,
"aa_start": 100,
"aa_end": null,
"aa_length": 364,
"cds_start": 298,
"cds_end": null,
"cds_length": 1095,
"cdna_start": 336,
"cdna_end": null,
"cdna_length": 5394,
"mane_select": "NM_013327.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.397G>T",
"hgvs_p": "p.Val133Leu",
"transcript": "ENST00000406477.7",
"protein_id": "ENSP00000384515.3",
"transcript_support_level": 1,
"aa_start": 133,
"aa_end": null,
"aa_length": 397,
"cds_start": 397,
"cds_end": null,
"cds_length": 1194,
"cdna_start": 527,
"cdna_end": null,
"cdna_length": 1569,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.187G>T",
"hgvs_p": "p.Val63Leu",
"transcript": "ENST00000404989.1",
"protein_id": "ENSP00000384353.1",
"transcript_support_level": 1,
"aa_start": 63,
"aa_end": null,
"aa_length": 327,
"cds_start": 187,
"cds_end": null,
"cds_length": 984,
"cdna_start": 288,
"cdna_end": null,
"cdna_length": 1591,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.142G>T",
"hgvs_p": "p.Val48Leu",
"transcript": "ENST00000619710.4",
"protein_id": "ENSP00000482511.1",
"transcript_support_level": 1,
"aa_start": 48,
"aa_end": null,
"aa_length": 289,
"cds_start": 142,
"cds_end": null,
"cds_length": 870,
"cdna_start": 259,
"cdna_end": null,
"cdna_length": 1530,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "n.336G>T",
"hgvs_p": null,
"transcript": "ENST00000402876.3",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 560,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.397G>T",
"hgvs_p": "p.Val133Leu",
"transcript": "NM_001003828.3",
"protein_id": "NP_001003828.1",
"transcript_support_level": null,
"aa_start": 133,
"aa_end": null,
"aa_length": 397,
"cds_start": 397,
"cds_end": null,
"cds_length": 1194,
"cdna_start": 527,
"cdna_end": null,
"cdna_length": 5585,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.187G>T",
"hgvs_p": "p.Val63Leu",
"transcript": "NM_001243385.2",
"protein_id": "NP_001230314.1",
"transcript_support_level": null,
"aa_start": 63,
"aa_end": null,
"aa_length": 327,
"cds_start": 187,
"cds_end": null,
"cds_length": 984,
"cdna_start": 243,
"cdna_end": null,
"cdna_length": 5301,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.142G>T",
"hgvs_p": "p.Val48Leu",
"transcript": "NM_001243386.2",
"protein_id": "NP_001230315.1",
"transcript_support_level": null,
"aa_start": 48,
"aa_end": null,
"aa_length": 289,
"cds_start": 142,
"cds_end": null,
"cds_length": 870,
"cdna_start": 259,
"cdna_end": null,
"cdna_length": 5248,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.292G>T",
"hgvs_p": "p.Val98Leu",
"transcript": "ENST00000444029.5",
"protein_id": "ENSP00000393758.1",
"transcript_support_level": 5,
"aa_start": 98,
"aa_end": null,
"aa_length": 193,
"cds_start": 292,
"cds_end": null,
"cds_length": 583,
"cdna_start": 451,
"cdna_end": null,
"cdna_length": 742,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.352G>T",
"hgvs_p": "p.Val118Leu",
"transcript": "XM_024452235.2",
"protein_id": "XP_024308003.1",
"transcript_support_level": null,
"aa_start": 118,
"aa_end": null,
"aa_length": 382,
"cds_start": 352,
"cds_end": null,
"cds_length": 1149,
"cdna_start": 563,
"cdna_end": null,
"cdna_length": 5621,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.397G>T",
"hgvs_p": "p.Val133Leu",
"transcript": "XM_024452236.2",
"protein_id": "XP_024308004.1",
"transcript_support_level": null,
"aa_start": 133,
"aa_end": null,
"aa_length": 374,
"cds_start": 397,
"cds_end": null,
"cds_length": 1125,
"cdna_start": 527,
"cdna_end": null,
"cdna_length": 5516,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.298G>T",
"hgvs_p": "p.Val100Leu",
"transcript": "XM_017028792.3",
"protein_id": "XP_016884281.1",
"transcript_support_level": null,
"aa_start": 100,
"aa_end": null,
"aa_length": 341,
"cds_start": 298,
"cds_end": null,
"cds_length": 1026,
"cdna_start": 336,
"cdna_end": null,
"cdna_length": 5325,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.187G>T",
"hgvs_p": "p.Val63Leu",
"transcript": "XM_024452237.2",
"protein_id": "XP_024308005.1",
"transcript_support_level": null,
"aa_start": 63,
"aa_end": null,
"aa_length": 327,
"cds_start": 187,
"cds_end": null,
"cds_length": 984,
"cdna_start": 286,
"cdna_end": null,
"cdna_length": 5344,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.187G>T",
"hgvs_p": "p.Val63Leu",
"transcript": "XM_047441349.1",
"protein_id": "XP_047297305.1",
"transcript_support_level": null,
"aa_start": 63,
"aa_end": null,
"aa_length": 327,
"cds_start": 187,
"cds_end": null,
"cds_length": 984,
"cdna_start": 322,
"cdna_end": null,
"cdna_length": 5380,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.187G>T",
"hgvs_p": "p.Val63Leu",
"transcript": "XM_047441350.1",
"protein_id": "XP_047297306.1",
"transcript_support_level": null,
"aa_start": 63,
"aa_end": null,
"aa_length": 327,
"cds_start": 187,
"cds_end": null,
"cds_length": 984,
"cdna_start": 338,
"cdna_end": null,
"cdna_length": 5396,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"hgvs_c": "c.142G>T",
"hgvs_p": "p.Val48Leu",
"transcript": "XM_047441351.1",
"protein_id": "XP_047297307.1",
"transcript_support_level": null,
"aa_start": 48,
"aa_end": null,
"aa_length": 312,
"cds_start": 142,
"cds_end": null,
"cds_length": 939,
"cdna_start": 205,
"cdna_end": null,
"cdna_length": 5263,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "PARVB",
"gene_hgnc_id": 14653,
"dbsnp": "rs769276683",
"frequency_reference_population": 0.000003717403,
"hom_count_reference_population": 0,
"allele_count_reference_population": 6,
"gnomad_exomes_af": 0.00000342069,
"gnomad_genomes_af": 0.00000656444,
"gnomad_exomes_ac": 5,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.2963413596153259,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.239,
"revel_prediction": "Benign",
"alphamissense_score": 0.3539,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.22,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.754,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000338758.12",
"gene_symbol": "PARVB",
"hgnc_id": 14653,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.298G>T",
"hgvs_p": "p.Val100Leu"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}