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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-49776066-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=49776066&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 49776066,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001304808.3",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "NM_001304808.3",
          "protein_id": "NP_001291737.1",
          "transcript_support_level": null,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000404760.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001304808.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "ENST00000404760.6",
          "protein_id": "ENSP00000385858.1",
          "transcript_support_level": 2,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001304808.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000404760.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "ENST00000216267.12",
          "protein_id": "ENSP00000216267.8",
          "transcript_support_level": 1,
          "aa_start": 941,
          "aa_end": null,
          "aa_length": 1058,
          "cds_start": 2822,
          "cds_end": null,
          "cds_length": 3177,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000216267.12"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "ENST00000404034.5",
          "protein_id": "ENSP00000384076.1",
          "transcript_support_level": 1,
          "aa_start": 941,
          "aa_end": null,
          "aa_length": 1058,
          "cds_start": 2822,
          "cds_end": null,
          "cds_length": 3177,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000404034.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "ENST00000457780.3",
          "protein_id": "ENSP00000410042.3",
          "transcript_support_level": 5,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000457780.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "ENST00000943548.1",
          "protein_id": "ENSP00000613607.1",
          "transcript_support_level": null,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000943548.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "ENST00000943551.1",
          "protein_id": "ENSP00000613610.1",
          "transcript_support_level": null,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000943551.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3215C>G",
          "hgvs_p": "p.Pro1072Arg",
          "transcript": "ENST00000943552.1",
          "protein_id": "ENSP00000613611.1",
          "transcript_support_level": null,
          "aa_start": 1072,
          "aa_end": null,
          "aa_length": 1189,
          "cds_start": 3215,
          "cds_end": null,
          "cds_length": 3570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000943552.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3209C>G",
          "hgvs_p": "p.Pro1070Arg",
          "transcript": "NM_001394548.1",
          "protein_id": "NP_001381477.1",
          "transcript_support_level": null,
          "aa_start": 1070,
          "aa_end": null,
          "aa_length": 1187,
          "cds_start": 3209,
          "cds_end": null,
          "cds_length": 3564,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394548.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3209C>G",
          "hgvs_p": "p.Pro1070Arg",
          "transcript": "ENST00000896283.1",
          "protein_id": "ENSP00000566342.1",
          "transcript_support_level": null,
          "aa_start": 1070,
          "aa_end": null,
          "aa_length": 1187,
          "cds_start": 3209,
          "cds_end": null,
          "cds_length": 3564,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000896283.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3209C>G",
          "hgvs_p": "p.Pro1070Arg",
          "transcript": "ENST00000935059.1",
          "protein_id": "ENSP00000605118.1",
          "transcript_support_level": null,
          "aa_start": 1070,
          "aa_end": null,
          "aa_length": 1187,
          "cds_start": 3209,
          "cds_end": null,
          "cds_length": 3564,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000935059.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3200C>G",
          "hgvs_p": "p.Pro1067Arg",
          "transcript": "NM_001349941.2",
          "protein_id": "NP_001336870.1",
          "transcript_support_level": null,
          "aa_start": 1067,
          "aa_end": null,
          "aa_length": 1184,
          "cds_start": 3200,
          "cds_end": null,
          "cds_length": 3555,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349941.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3200C>G",
          "hgvs_p": "p.Pro1067Arg",
          "transcript": "ENST00000943550.1",
          "protein_id": "ENSP00000613609.1",
          "transcript_support_level": null,
          "aa_start": 1067,
          "aa_end": null,
          "aa_length": 1184,
          "cds_start": 3200,
          "cds_end": null,
          "cds_length": 3555,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000943550.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.3194C>G",
          "hgvs_p": "p.Pro1065Arg",
          "transcript": "NM_001394549.1",
          "protein_id": "NP_001381478.1",
          "transcript_support_level": null,
          "aa_start": 1065,
          "aa_end": null,
          "aa_length": 1182,
          "cds_start": 3194,
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          "cds_length": 3549,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001394549.1"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2969C>G",
          "hgvs_p": "p.Pro990Arg",
          "transcript": "NM_001349940.2",
          "protein_id": "NP_001336869.1",
          "transcript_support_level": null,
          "aa_start": 990,
          "aa_end": null,
          "aa_length": 1107,
          "cds_start": 2969,
          "cds_end": null,
          "cds_length": 3324,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349940.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2846C>G",
          "hgvs_p": "p.Pro949Arg",
          "transcript": "ENST00000943546.1",
          "protein_id": "ENSP00000613605.1",
          "transcript_support_level": null,
          "aa_start": 949,
          "aa_end": null,
          "aa_length": 1066,
          "cds_start": 2846,
          "cds_end": null,
          "cds_length": 3201,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000943546.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "NM_001304809.1",
          "protein_id": "NP_001291738.1",
          "transcript_support_level": null,
          "aa_start": 941,
          "aa_end": null,
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          "cds_start": 2822,
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          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "NM_001304809.1"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "NM_001394551.1",
          "protein_id": "NP_001381480.1",
          "transcript_support_level": null,
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          "cds_start": 2822,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001394551.1"
        },
        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
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          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "NM_001394552.1",
          "protein_id": "NP_001381481.1",
          "transcript_support_level": null,
          "aa_start": 941,
          "aa_end": null,
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          "cds_start": 2822,
          "cds_end": null,
          "cds_length": 3177,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001394552.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BRD1",
          "gene_hgnc_id": 1102,
          "hgvs_c": "c.2822C>G",
          "hgvs_p": "p.Pro941Arg",
          "transcript": "ENST00000896282.1",
          "protein_id": "ENSP00000566341.1",
          "transcript_support_level": null,
          "aa_start": 941,
          "aa_end": null,
          "aa_length": 1058,
          "cds_start": 2822,
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.