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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-50454858-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=50454858&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "22",
      "pos": 50454858,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "ENST00000380817.8",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4768A>G",
          "hgvs_p": "p.Thr1590Ala",
          "transcript": "NM_002972.4",
          "protein_id": "NP_002963.2",
          "transcript_support_level": null,
          "aa_start": 1590,
          "aa_end": null,
          "aa_length": 1893,
          "cds_start": 4768,
          "cds_end": null,
          "cds_length": 5682,
          "cdna_start": 4963,
          "cdna_end": null,
          "cdna_length": 8019,
          "mane_select": "ENST00000380817.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4768A>G",
          "hgvs_p": "p.Thr1590Ala",
          "transcript": "ENST00000380817.8",
          "protein_id": "ENSP00000370196.2",
          "transcript_support_level": 1,
          "aa_start": 1590,
          "aa_end": null,
          "aa_length": 1893,
          "cds_start": 4768,
          "cds_end": null,
          "cds_length": 5682,
          "cdna_start": 4963,
          "cdna_end": null,
          "cdna_length": 8019,
          "mane_select": "NM_002972.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.400A>G",
          "hgvs_p": "p.Thr134Ala",
          "transcript": "ENST00000418590.4",
          "protein_id": "ENSP00000401538.2",
          "transcript_support_level": 1,
          "aa_start": 134,
          "aa_end": null,
          "aa_length": 425,
          "cds_start": 400,
          "cds_end": null,
          "cds_length": 1278,
          "cdna_start": 400,
          "cdna_end": null,
          "cdna_length": 1610,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4786A>G",
          "hgvs_p": "p.Thr1596Ala",
          "transcript": "ENST00000693052.1",
          "protein_id": "ENSP00000509558.1",
          "transcript_support_level": null,
          "aa_start": 1596,
          "aa_end": null,
          "aa_length": 1899,
          "cds_start": 4786,
          "cds_end": null,
          "cds_length": 5700,
          "cdna_start": 4952,
          "cdna_end": null,
          "cdna_length": 6202,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4771A>G",
          "hgvs_p": "p.Thr1591Ala",
          "transcript": "NM_001410794.1",
          "protein_id": "NP_001397723.1",
          "transcript_support_level": null,
          "aa_start": 1591,
          "aa_end": null,
          "aa_length": 1894,
          "cds_start": 4771,
          "cds_end": null,
          "cds_length": 5685,
          "cdna_start": 4966,
          "cdna_end": null,
          "cdna_length": 8022,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4771A>G",
          "hgvs_p": "p.Thr1591Ala",
          "transcript": "ENST00000684986.1",
          "protein_id": "ENSP00000509117.1",
          "transcript_support_level": null,
          "aa_start": 1591,
          "aa_end": null,
          "aa_length": 1894,
          "cds_start": 4771,
          "cds_end": null,
          "cds_length": 5685,
          "cdna_start": 4956,
          "cdna_end": null,
          "cdna_length": 6200,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4768A>G",
          "hgvs_p": "p.Thr1590Ala",
          "transcript": "ENST00000688066.1",
          "protein_id": "ENSP00000510782.1",
          "transcript_support_level": null,
          "aa_start": 1590,
          "aa_end": null,
          "aa_length": 1893,
          "cds_start": 4768,
          "cds_end": null,
          "cds_length": 5682,
          "cdna_start": 4938,
          "cdna_end": null,
          "cdna_length": 6110,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4765A>G",
          "hgvs_p": "p.Thr1589Ala",
          "transcript": "ENST00000693440.1",
          "protein_id": "ENSP00000509462.1",
          "transcript_support_level": null,
          "aa_start": 1589,
          "aa_end": null,
          "aa_length": 1892,
          "cds_start": 4765,
          "cds_end": null,
          "cds_length": 5679,
          "cdna_start": 4937,
          "cdna_end": null,
          "cdna_length": 6187,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4762A>G",
          "hgvs_p": "p.Thr1588Ala",
          "transcript": "ENST00000690990.1",
          "protein_id": "ENSP00000510461.1",
          "transcript_support_level": null,
          "aa_start": 1588,
          "aa_end": null,
          "aa_length": 1891,
          "cds_start": 4762,
          "cds_end": null,
          "cds_length": 5676,
          "cdna_start": 4941,
          "cdna_end": null,
          "cdna_length": 6191,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4756A>G",
          "hgvs_p": "p.Thr1586Ala",
          "transcript": "ENST00000691792.1",
          "protein_id": "ENSP00000509911.1",
          "transcript_support_level": null,
          "aa_start": 1586,
          "aa_end": null,
          "aa_length": 1888,
          "cds_start": 4756,
          "cds_end": null,
          "cds_length": 5667,
          "cdna_start": 4946,
          "cdna_end": null,
          "cdna_length": 6179,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4768A>G",
          "hgvs_p": "p.Thr1590Ala",
          "transcript": "ENST00000689981.1",
          "protein_id": "ENSP00000509035.1",
          "transcript_support_level": null,
          "aa_start": 1590,
          "aa_end": null,
          "aa_length": 1880,
          "cds_start": 4768,
          "cds_end": null,
          "cds_length": 5643,
          "cdna_start": 4963,
          "cdna_end": null,
          "cdna_length": 6174,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4693A>G",
          "hgvs_p": "p.Thr1565Ala",
          "transcript": "NM_001365819.1",
          "protein_id": "NP_001352748.1",
          "transcript_support_level": null,
          "aa_start": 1565,
          "aa_end": null,
          "aa_length": 1868,
          "cds_start": 4693,
          "cds_end": null,
          "cds_length": 5607,
          "cdna_start": 4888,
          "cdna_end": null,
          "cdna_length": 7944,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4693A>G",
          "hgvs_p": "p.Thr1565Ala",
          "transcript": "ENST00000689129.1",
          "protein_id": "ENSP00000510414.1",
          "transcript_support_level": null,
          "aa_start": 1565,
          "aa_end": null,
          "aa_length": 1868,
          "cds_start": 4693,
          "cds_end": null,
          "cds_length": 5607,
          "cdna_start": 4924,
          "cdna_end": null,
          "cdna_length": 8669,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4690A>G",
          "hgvs_p": "p.Thr1564Ala",
          "transcript": "NM_001410795.1",
          "protein_id": "NP_001397724.1",
          "transcript_support_level": null,
          "aa_start": 1564,
          "aa_end": null,
          "aa_length": 1867,
          "cds_start": 4690,
          "cds_end": null,
          "cds_length": 5604,
          "cdna_start": 4885,
          "cdna_end": null,
          "cdna_length": 7941,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4690A>G",
          "hgvs_p": "p.Thr1564Ala",
          "transcript": "ENST00000348911.11",
          "protein_id": "ENSP00000252027.8",
          "transcript_support_level": 5,
          "aa_start": 1564,
          "aa_end": null,
          "aa_length": 1867,
          "cds_start": 4690,
          "cds_end": null,
          "cds_length": 5604,
          "cdna_start": 4875,
          "cdna_end": null,
          "cdna_length": 6125,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4687A>G",
          "hgvs_p": "p.Thr1563Ala",
          "transcript": "ENST00000691233.1",
          "protein_id": "ENSP00000509215.1",
          "transcript_support_level": null,
          "aa_start": 1563,
          "aa_end": null,
          "aa_length": 1866,
          "cds_start": 4687,
          "cds_end": null,
          "cds_length": 5601,
          "cdna_start": 4880,
          "cdna_end": null,
          "cdna_length": 6130,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4681A>G",
          "hgvs_p": "p.Thr1561Ala",
          "transcript": "ENST00000685809.1",
          "protein_id": "ENSP00000508863.1",
          "transcript_support_level": null,
          "aa_start": 1561,
          "aa_end": null,
          "aa_length": 1864,
          "cds_start": 4681,
          "cds_end": null,
          "cds_length": 5595,
          "cdna_start": 4882,
          "cdna_end": null,
          "cdna_length": 6132,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.4669A>G",
          "hgvs_p": "p.Thr1557Ala",
          "transcript": "ENST00000687016.1",
          "protein_id": "ENSP00000509074.1",
          "transcript_support_level": null,
          "aa_start": 1557,
          "aa_end": null,
          "aa_length": 1859,
          "cds_start": 4669,
          "cds_end": null,
          "cds_length": 5580,
          "cdna_start": 4845,
          "cdna_end": null,
          "cdna_length": 6091,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.847A>G",
          "hgvs_p": "p.Thr283Ala",
          "transcript": "ENST00000691306.1",
          "protein_id": "ENSP00000508964.1",
          "transcript_support_level": null,
          "aa_start": 283,
          "aa_end": null,
          "aa_length": 409,
          "cds_start": 847,
          "cds_end": null,
          "cds_length": 1230,
          "cdna_start": 849,
          "cdna_end": null,
          "cdna_length": 1232,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SBF1",
          "gene_hgnc_id": 10542,
          "hgvs_c": "c.844A>G",
          "hgvs_p": "p.Thr282Ala",
          "transcript": "ENST00000686029.1",
          "protein_id": "ENSP00000510100.1",
          "transcript_support_level": null,
          "aa_start": 282,
          "aa_end": null,
          "aa_length": 295,
          "cds_start": 844,
          "cds_end": null,
          "cds_length": 888,
          "cdna_start": 846,
          "cdna_end": null,
          "cdna_length": 890,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
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      "gene_symbol": "SBF1",
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      "dbsnp": "rs200488568",
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      "gnomad_exomes_af": 0.000235328,
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      "gnomad_genomes_ac": 54,
      "gnomad_exomes_homalt": 1,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": 0.02074253559112549,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.274,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0858,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.26,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.197,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_prediction": null,
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      "mitotip_prediction": null,
      "acmg_score": -5,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Strong,BS1_Supporting",
      "acmg_by_gene": [
        {
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          "benign_score": 5,
          "pathogenic_score": 0,
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            "BS1_Supporting"
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          "verdict": "Likely_benign",
          "transcript": "ENST00000380817.8",
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          "effects": [
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          "inheritance_mode": "AR",
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          "hgvs_p": "p.Thr1590Ala"
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      ],
      "clinvar_disease": "Charcot-Marie-Tooth disease type 4B3,Tip-toe gait,not provided,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "P:1 LP:1 US:7",
      "phenotype_combined": "Charcot-Marie-Tooth disease type 4B3|not specified|not provided|Tip-toe gait",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}