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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 22-50582318-CG-GA (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=22&pos=50582318&ref=CG&alt=GA&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PP3"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "CHKB",
          "hgnc_id": 1938,
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "inheritance_mode": "AR",
          "pathogenic_score": 1,
          "score": 1,
          "transcript": "NM_005198.5",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PP3"
          ],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "CHKB-CPT1B",
          "hgnc_id": 41998,
          "hgvs_c": "n.647_648delCGinsTC",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 1,
          "score": 1,
          "transcript": "ENST00000492556.5",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP3",
      "acmg_score": 1,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "GA",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "22",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 395,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1474,
          "cdna_start": 332,
          "cds_end": null,
          "cds_length": 1188,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_005198.5",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000406938.3",
          "protein_coding": true,
          "protein_id": "NP_005189.2",
          "strand": false,
          "transcript": "NM_005198.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 395,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1474,
          "cdna_start": 332,
          "cds_end": null,
          "cds_length": 1188,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000406938.3",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_005198.5",
          "protein_coding": true,
          "protein_id": "ENSP00000384400.3",
          "strand": false,
          "transcript": "ENST00000406938.3",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1856,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000481673.5",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "n.327_328delCGinsTC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000481673.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 422,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1514,
          "cdna_start": 296,
          "cds_end": null,
          "cds_length": 1269,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000939160.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609219.1",
          "strand": false,
          "transcript": "ENST00000939160.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 411,
          "aa_ref": "P",
          "aa_start": 104,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1520,
          "cdna_start": 379,
          "cds_end": null,
          "cds_length": 1236,
          "cds_start": 311,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000885878.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.311_312delCGinsTC",
          "hgvs_p": "p.Pro104Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555937.1",
          "strand": false,
          "transcript": "ENST00000885878.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 404,
          "aa_ref": "P",
          "aa_start": 97,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1499,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 1215,
          "cds_start": 290,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000939159.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.290_291delCGinsTC",
          "hgvs_p": "p.Pro97Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609218.1",
          "strand": false,
          "transcript": "ENST00000939159.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "PR",
          "aa_end": null,
          "aa_length": 402,
          "aa_ref": "PG",
          "aa_start": 90,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1498,
          "cdna_start": 343,
          "cds_end": null,
          "cds_length": 1209,
          "cds_start": 270,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000885877.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.270_271delCGinsTC",
          "hgvs_p": "p.Gly91Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555936.1",
          "strand": false,
          "transcript": "ENST00000885877.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "PR",
          "aa_end": null,
          "aa_length": 398,
          "aa_ref": "PG",
          "aa_start": 86,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1453,
          "cdna_start": 298,
          "cds_end": null,
          "cds_length": 1197,
          "cds_start": 258,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000949612.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.258_259delCGinsTC",
          "hgvs_p": "p.Gly87Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619671.1",
          "strand": false,
          "transcript": "ENST00000949612.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 372,
          "aa_ref": "P",
          "aa_start": 65,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1512,
          "cdna_start": 370,
          "cds_end": null,
          "cds_length": 1119,
          "cds_start": 194,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000939157.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.194_195delCGinsTC",
          "hgvs_p": "p.Pro65Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609216.1",
          "strand": false,
          "transcript": "ENST00000939157.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 363,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1355,
          "cdna_start": 312,
          "cds_end": null,
          "cds_length": 1092,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000885880.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555939.1",
          "strand": false,
          "transcript": "ENST00000885880.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 324,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1204,
          "cdna_start": 278,
          "cds_end": null,
          "cds_length": 975,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000939161.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609220.1",
          "strand": false,
          "transcript": "ENST00000939161.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "L",
          "aa_end": null,
          "aa_length": 277,
          "aa_ref": "P",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1115,
          "cdna_start": 330,
          "cds_end": null,
          "cds_length": 834,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000949611.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.263_264delCGinsTC",
          "hgvs_p": "p.Pro88Leu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619670.1",
          "strand": false,
          "transcript": "ENST00000949611.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 377,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1401,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1134,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 11,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000885879.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.225-16_225-15delCGinsTC",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555938.1",
          "strand": false,
          "transcript": "ENST00000885879.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 361,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1341,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 1086,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000949613.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.231+232_231+233delCGinsTC",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000619672.1",
          "strand": false,
          "transcript": "ENST00000949613.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 276,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1119,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 831,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 8,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000939158.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "c.224+239_224+240delCGinsTC",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000609217.1",
          "strand": false,
          "transcript": "ENST00000939158.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 886,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000463053.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "n.345_346delCGinsTC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000463053.1",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 428,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 2,
          "exon_rank": 1,
          "exon_rank_end": null,
          "feature": "ENST00000465842.1",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "n.102_103delCGinsTC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000465842.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1052,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 1,
          "exon_rank_end": null,
          "feature": "ENST00000468532.5",
          "gene_hgnc_id": 1938,
          "gene_symbol": "CHKB",
          "hgvs_c": "n.140_141delCGinsTC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000468532.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1010,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 5,
          "exon_rank": 1,
          "exon_rank_end": null,
          "feature": "ENST00000476289.5",
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.