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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-119025735-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=119025735&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 119025735,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000393775.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001015887.3",
"protein_id": "NP_001015887.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 431,
"cds_start": -4,
"cds_end": null,
"cds_length": 1296,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3523,
"mane_select": "ENST00000393775.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "ENST00000393775.7",
"protein_id": "ENSP00000377370.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 431,
"cds_start": -4,
"cds_end": null,
"cds_length": 1296,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3523,
"mane_select": "NM_001015887.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
"hgvs_p": null,
"transcript": "ENST00000354673.6",
"protein_id": "ENSP00000346700.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": -4,
"cds_end": null,
"cds_length": 1293,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3206,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353318.2",
"protein_id": "NP_001340247.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 481,
"cds_start": -4,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3673,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353319.2",
"protein_id": "NP_001340248.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 453,
"cds_start": -4,
"cds_end": null,
"cds_length": 1362,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3589,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
"hgvs_p": null,
"transcript": "NM_001353320.2",
"protein_id": "NP_001340249.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": -4,
"cds_end": null,
"cds_length": 1293,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3477,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
"hgvs_p": null,
"transcript": "NM_152538.4",
"protein_id": "NP_689751.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": -4,
"cds_end": null,
"cds_length": 1293,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3606,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
"hgvs_p": null,
"transcript": "ENST00000425327.6",
"protein_id": "ENSP00000406092.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 430,
"cds_start": -4,
"cds_end": null,
"cds_length": 1293,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353321.2",
"protein_id": "NP_001340250.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 407,
"cds_start": -4,
"cds_end": null,
"cds_length": 1224,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3451,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "ENST00000489689.5",
"protein_id": "ENSP00000420486.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 407,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3320,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
"hgvs_p": null,
"transcript": "NM_001353322.2",
"protein_id": "NP_001340251.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 406,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3534,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
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"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.49+79409C>T",
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"transcript": "ENST00000441144.6",
"protein_id": "ENSP00000401240.2",
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"cdna_start": null,
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353323.2",
"protein_id": "NP_001340252.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "ENST00000491903.1",
"protein_id": "ENSP00000417413.1",
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"aa_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353324.2",
"protein_id": "NP_001340253.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.-216+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353325.2",
"protein_id": "NP_001340254.1",
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},
{
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],
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"gene_symbol": "IGSF11",
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"hgvs_c": "c.-216+8796C>T",
"hgvs_p": null,
"transcript": "NM_001353326.2",
"protein_id": "NP_001340255.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 1,
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"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "c.-216+8796C>T",
"hgvs_p": null,
"transcript": "ENST00000480431.5",
"protein_id": "ENSP00000418047.1",
"transcript_support_level": 4,
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"aa_length": 31,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"hgvs_c": "n.349-76417C>T",
"hgvs_p": null,
"transcript": "ENST00000494802.1",
"protein_id": null,
"transcript_support_level": 5,
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"biotype": null,
"feature": null
}
],
"gene_symbol": "IGSF11",
"gene_hgnc_id": 16669,
"dbsnp": "rs251456",
"frequency_reference_population": 0.12028588,
"hom_count_reference_population": 1262,
"allele_count_reference_population": 18244,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.120286,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 18244,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 1262,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9300000071525574,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.93,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.4,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000393775.7",
"gene_symbol": "IGSF11",
"hgnc_id": 16669,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.52+8796C>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}