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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-123733883-CCT-ACG (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=123733883&ref=CCT&alt=ACG&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 1,
"criteria": [
"BP7"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "MYLK",
"hgnc_id": 7590,
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"inheritance_mode": "AD,Unknown,AR",
"pathogenic_score": 0,
"score": -1,
"transcript": "NM_053025.4",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP7",
"acmg_score": -1,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "ACG",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "3",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10113,
"cdna_start": 1425,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 34,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_053025.4",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000360304.8",
"protein_coding": true,
"protein_id": "NP_444253.3",
"strand": false,
"transcript": "NM_053025.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 10113,
"cdna_start": 1425,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 34,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000360304.8",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_053025.4",
"protein_coding": true,
"protein_id": "ENSP00000353452.3",
"strand": false,
"transcript": "ENST00000360304.8",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 5901,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 33,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000464489.5",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "n.*690_*692delAGGinsCGT",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000417798.1",
"strand": false,
"transcript": "ENST00000464489.5",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 5901,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 33,
"exon_rank": 9,
"exon_rank_end": null,
"feature": "ENST00000464489.5",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "n.*690_*692delAGGinsCGT",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000417798.1",
"strand": false,
"transcript": "ENST00000464489.5",
"transcript_support_level": 1
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1924,
"aa_ref": "R",
"aa_start": 381,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5956,
"cdna_start": 1305,
"cds_end": null,
"cds_length": 5775,
"cds_start": 1141,
"consequences": [
"synonymous_variant"
],
"exon_count": 32,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000687848.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1141_1143delAGGinsCGT",
"hgvs_p": "p.382",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000508761.1",
"strand": false,
"transcript": "ENST00000687848.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6162,
"cdna_start": 1472,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 32,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000686761.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000508758.1",
"strand": false,
"transcript": "ENST00000686761.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6117,
"cdna_start": 1409,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000971487.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000641546.1",
"strand": false,
"transcript": "ENST00000971487.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6041,
"cdna_start": 1333,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000971488.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000641547.1",
"strand": false,
"transcript": "ENST00000971488.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 8025,
"cdna_start": 1584,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 32,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000971489.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000641548.1",
"strand": false,
"transcript": "ENST00000971489.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1914,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6005,
"cdna_start": 1314,
"cds_end": null,
"cds_length": 5745,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 32,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000971490.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000641549.1",
"strand": false,
"transcript": "ENST00000971490.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1913,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5783,
"cdna_start": 1116,
"cds_end": null,
"cds_length": 5742,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 31,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000686406.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509044.1",
"strand": false,
"transcript": "ENST00000686406.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1863,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9960,
"cdna_start": 1425,
"cds_end": null,
"cds_length": 5592,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_053027.4",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_444255.3",
"strand": false,
"transcript": "NM_053027.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1863,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10027,
"cdna_start": 1492,
"cds_end": null,
"cds_length": 5592,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 34,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000360772.7",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000354004.3",
"strand": false,
"transcript": "ENST00000360772.7",
"transcript_support_level": 5
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1845,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9906,
"cdna_start": 1425,
"cds_end": null,
"cds_length": 5538,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_053026.4",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_444254.3",
"strand": false,
"transcript": "NM_053026.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1845,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7398,
"cdna_start": 1407,
"cds_end": null,
"cds_length": 5538,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000693689.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000510503.1",
"strand": false,
"transcript": "ENST00000693689.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1794,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9753,
"cdna_start": 1425,
"cds_end": null,
"cds_length": 5385,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 32,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_053028.4",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_444256.3",
"strand": false,
"transcript": "NM_053028.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1794,
"aa_ref": "R",
"aa_start": 371,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5566,
"cdna_start": 1232,
"cds_end": null,
"cds_length": 5385,
"cds_start": 1111,
"consequences": [
"synonymous_variant"
],
"exon_count": 30,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000346322.10",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1111_1113delAGGinsCGT",
"hgvs_p": "p.372",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000320622.6",
"strand": false,
"transcript": "ENST00000346322.10",
"transcript_support_level": 5
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1738,
"aa_ref": "R",
"aa_start": 195,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 9905,
"cdna_start": 1217,
"cds_end": null,
"cds_length": 5217,
"cds_start": 583,
"consequences": [
"synonymous_variant"
],
"exon_count": 33,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001321309.2",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.583_585delAGGinsCGT",
"hgvs_p": "p.196",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001308238.1",
"strand": false,
"transcript": "NM_001321309.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1924,
"aa_ref": "R",
"aa_start": 381,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10114,
"cdna_start": 1426,
"cds_end": null,
"cds_length": 5775,
"cds_start": 1141,
"consequences": [
"synonymous_variant"
],
"exon_count": 34,
"exon_rank": null,
"exon_rank_end": null,
"feature": "XM_024453532.2",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1141_1143delAGGinsCGT",
"hgvs_p": "p.382",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_024309300.1",
"strand": false,
"transcript": "XM_024453532.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1924,
"aa_ref": "R",
"aa_start": 381,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10173,
"cdna_start": 1485,
"cds_end": null,
"cds_length": 5775,
"cds_start": 1141,
"consequences": [
"synonymous_variant"
],
"exon_count": 35,
"exon_rank": null,
"exon_rank_end": null,
"feature": "XM_047448183.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
"hgvs_c": "c.1141_1143delAGGinsCGT",
"hgvs_p": "p.382",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047304139.1",
"strand": false,
"transcript": "XM_047448183.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1924,
"aa_ref": "R",
"aa_start": 381,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 10241,
"cdna_start": 1553,
"cds_end": null,
"cds_length": 5775,
"cds_start": 1141,
"consequences": [
"synonymous_variant"
],
"exon_count": 36,
"exon_rank": null,
"exon_rank_end": null,
"feature": "XM_047448187.1",
"gene_hgnc_id": 7590,
"gene_symbol": "MYLK",
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