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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-128481880-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=128481880&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 128481880,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_032638.5",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "NM_001145661.2",
"protein_id": "NP_001139133.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": "ENST00000487848.6",
"biotype": "protein_coding",
"feature": "NM_001145661.2"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "NM_032638.5",
"protein_id": "NP_116027.2",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000341105.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_032638.5"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000341105.7",
"protein_id": "ENSP00000345681.2",
"transcript_support_level": 1,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_032638.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000341105.7"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000487848.6",
"protein_id": "ENSP00000417074.1",
"transcript_support_level": 1,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": "NM_001145661.2",
"biotype": "protein_coding",
"feature": "ENST00000487848.6"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1040G>T",
"hgvs_p": "p.Arg347Leu",
"transcript": "ENST00000430265.6",
"protein_id": "ENSP00000400259.2",
"transcript_support_level": 1,
"aa_start": 347,
"aa_end": null,
"aa_length": 466,
"cds_start": 1040,
"cds_end": null,
"cds_length": 1401,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000430265.6"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1364G>T",
"hgvs_p": "p.Arg455Leu",
"transcript": "ENST00000696466.1",
"protein_id": "ENSP00000512647.1",
"transcript_support_level": null,
"aa_start": 455,
"aa_end": null,
"aa_length": 574,
"cds_start": 1364,
"cds_end": null,
"cds_length": 1725,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000696466.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906584.1",
"protein_id": "ENSP00000576643.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906584.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906585.1",
"protein_id": "ENSP00000576644.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906585.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906587.1",
"protein_id": "ENSP00000576646.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906587.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906588.1",
"protein_id": "ENSP00000576647.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906588.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906589.1",
"protein_id": "ENSP00000576648.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906589.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906590.1",
"protein_id": "ENSP00000576649.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906590.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906591.1",
"protein_id": "ENSP00000576650.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906591.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906592.1",
"protein_id": "ENSP00000576651.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906592.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906593.1",
"protein_id": "ENSP00000576652.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906593.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000906594.1",
"protein_id": "ENSP00000576653.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906594.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000937284.1",
"protein_id": "ENSP00000607343.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000937284.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000962723.1",
"protein_id": "ENSP00000632782.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962723.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000962724.1",
"protein_id": "ENSP00000632783.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962724.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000962725.1",
"protein_id": "ENSP00000632784.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962725.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu",
"transcript": "ENST00000962726.1",
"protein_id": "ENSP00000632785.1",
"transcript_support_level": null,
"aa_start": 361,
"aa_end": null,
"aa_length": 480,
"cds_start": 1082,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000962726.1"
},
{
"aa_ref": "R",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GATA2",
"gene_hgnc_id": 4171,
"hgvs_c": "c.1079G>T",
"hgvs_p": "p.Arg360Leu",
"transcript": "ENST00000906586.1",
"protein_id": "ENSP00000576645.1",
"transcript_support_level": null,
"aa_start": 360,
"aa_end": null,
"aa_length": 479,
"cds_start": 1079,
"cds_end": null,
"cds_length": 1440,
"cdna_start": null,
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{
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{
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{
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"non_coding_transcript_exon_variant"
],
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"biotype": "retained_intron",
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],
"gene_symbol": "GATA2",
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"dbsnp": "rs387906634",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9895758032798767,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.987,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9999,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.6,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 7.836,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 12,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PM1,PM2,PM5,PP3_Strong,PP5_Moderate",
"acmg_by_gene": [
{
"score": 12,
"benign_score": 0,
"pathogenic_score": 12,
"criteria": [
"PM1",
"PM2",
"PM5",
"PP3_Strong",
"PP5_Moderate"
],
"verdict": "Pathogenic",
"transcript": "NM_032638.5",
"gene_symbol": "GATA2",
"hgnc_id": 4171,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.1082G>T",
"hgvs_p": "p.Arg361Leu"
}
],
"clinvar_disease": "Deafness-lymphedema-leukemia syndrome,GATA2 deficiency with susceptibility to MDS/AML",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "P:1",
"phenotype_combined": "Deafness-lymphedema-leukemia syndrome|Deafness-lymphedema-leukemia syndrome;GATA2 deficiency with susceptibility to MDS/AML",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}