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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-134507257-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=134507257&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 134507257,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000675561.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_001353108.3",
          "protein_id": "NP_001340037.1",
          "transcript_support_level": null,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 364,
          "cdna_end": null,
          "cdna_length": 5779,
          "mane_select": "ENST00000675561.1",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000675561.1",
          "protein_id": "ENSP00000502085.1",
          "transcript_support_level": null,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 364,
          "cdna_end": null,
          "cdna_length": 5779,
          "mane_select": "NM_001353108.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000383229.8",
          "protein_id": "ENSP00000372716.3",
          "transcript_support_level": 1,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 541,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 1626,
          "cdna_start": 364,
          "cdna_end": null,
          "cdna_length": 5293,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000332047.10",
          "protein_id": "ENSP00000328382.5",
          "transcript_support_level": 1,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 495,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 1488,
          "cdna_start": 528,
          "cdna_end": null,
          "cdna_length": 5319,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.-189A>G",
          "hgvs_p": null,
          "transcript": "NM_001353126.2",
          "protein_id": "NP_001340055.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 374,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1125,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5599,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_025180.5",
          "protein_id": "NP_079456.2",
          "transcript_support_level": null,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 790,
          "cdna_end": null,
          "cdna_length": 6205,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000513612.7",
          "protein_id": "ENSP00000426129.1",
          "transcript_support_level": 2,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 620,
          "cdna_end": null,
          "cdna_length": 6035,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000606977.5",
          "protein_id": "ENSP00000475903.1",
          "transcript_support_level": 5,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 521,
          "cdna_end": null,
          "cdna_length": 2800,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000683596.1",
          "protein_id": "ENSP00000506896.1",
          "transcript_support_level": null,
          "aa_start": 65,
          "aa_end": null,
          "aa_length": 703,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 2112,
          "cdna_start": 572,
          "cdna_end": null,
          "cdna_length": 2723,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.109A>G",
          "hgvs_p": "p.Arg37Gly",
          "transcript": "ENST00000683190.1",
          "protein_id": "ENSP00000508034.1",
          "transcript_support_level": null,
          "aa_start": 37,
          "aa_end": null,
          "aa_length": 675,
          "cds_start": 109,
          "cds_end": null,
          "cds_length": 2028,
          "cdna_start": 241,
          "cdna_end": null,
          "cdna_length": 2392,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 3,
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          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_001353109.1",
          "protein_id": "NP_001340038.1",
          "transcript_support_level": null,
          "aa_start": 65,
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          "aa_length": 657,
          "cds_start": 193,
          "cds_end": null,
          "cds_length": 1974,
          "cdna_start": 547,
          "cdna_end": null,
          "cdna_length": 5821,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000682402.1",
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          "mane_select": null,
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        {
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          "strand": true,
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          ],
          "exon_rank": 3,
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          "exon_count": 14,
          "intron_rank": null,
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          "gene_symbol": "CEP63",
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          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
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          "protein_id": "ENSP00000507263.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_001042400.3",
          "protein_id": "NP_001035859.1",
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        },
        {
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          ],
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        {
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          "intron_rank": null,
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_001353111.2",
          "protein_id": "NP_001340040.1",
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        {
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          "exon_rank": 4,
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          "gene_symbol": "CEP63",
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          "hgvs_c": "c.193A>G",
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          "transcript": "NM_001353112.2",
          "protein_id": "NP_001340041.1",
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        },
        {
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          ],
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          "gene_symbol": "CEP63",
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        {
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        {
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          ],
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "ENST00000684677.1",
          "protein_id": "ENSP00000507217.1",
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          "cdna_length": 5506,
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
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          "intron_rank": null,
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          "gene_symbol": "CEP63",
          "gene_hgnc_id": 25815,
          "hgvs_c": "c.193A>G",
          "hgvs_p": "p.Arg65Gly",
          "transcript": "NM_001353113.1",
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      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "bayesdelnoaf_score": -0.4,
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      "phylop100way_score": 2.059,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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            "BP6_Moderate"
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          "verdict": "Likely_benign",
          "transcript": "ENST00000675561.1",
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        {
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            "BP6_Moderate"
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          "verdict": "Likely_benign",
          "transcript": "ENST00000472904.6",
          "gene_symbol": "ENSG00000288700",
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          "effects": [
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          "inheritance_mode": "",
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      "clinvar_disease": "not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
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  "message": null
}